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commit c8948eb55e737fdca74cc689c3a103f3a8a7d33b Author: latticetower-guest <[email protected]> Date: Wed Jun 15 20:59:00 2016 +0300 add networkx to d/control and test dependencies, mention in README.test --- debian/README.test | 4 ++++ debian/changelog | 1 + debian/control | 3 ++- debian/tests/control | 6 +++++- 4 files changed, 12 insertions(+), 2 deletions(-) diff --git a/debian/README.test b/debian/README.test index 915a3ad..2872bbb 100644 --- a/debian/README.test +++ b/debian/README.test @@ -11,6 +11,7 @@ If you have both pdb2pqr and pdb2pqr-doc packages installed, you can test their installation by executing sh ligands-test + sh pdb2pka-test During data processing, pdb2pqr can write multiple warning messages to stderr. This output means that PDB file contains erranous data, which could be repaired @@ -29,6 +30,9 @@ Possible PDB IDs can be found in RCSB PDB database [1] and other sources. To see other options, call `pdb2pqr` without parameters or with `-h` key. +When --ph-calc-method=pdb2pka is used, package requires python networkx library +to be installed. Test `pdb2pka-test` passes only if this library is installed. + References: [1]: RCSB PDB database (one of the possible sources of .pdb files) diff --git a/debian/changelog b/debian/changelog index 53c73e7..9b17490 100644 --- a/debian/changelog +++ b/debian/changelog @@ -10,6 +10,7 @@ pdb2pqr (2.1.1+dfsg-2) UNRELEASED; urgency=medium in testsuite), updated d/docs * fixed `pdb2pqr-test` - now should work ok (haven't checked with apbs yet) * add patch to remove debug-file-with-no-debug-symbols warning (turn on debug) + * add networkx to d/control and test dependencies, mention in README.test -- Tatiana Malygina <[email protected]> Mon, 13 Jun 2016 15:31:19 +0000 diff --git a/debian/control b/debian/control index 991f041..ee91fc0 100644 --- a/debian/control +++ b/debian/control @@ -25,7 +25,8 @@ Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, - python-numpy + python-numpy, + python-networkx Suggests: apbs Enhances: autodocktools Provides: propka diff --git a/debian/tests/control b/debian/tests/control index c9e4ae8..72263de 100644 --- a/debian/tests/control +++ b/debian/tests/control @@ -2,6 +2,10 @@ Tests: installation-test Depends: pdb2pqr Restrictions: allow-stderr -Tests: ligands-test, pdb2pka-test +Tests: ligands-test Depends: @ Restrictions: allow-stderr + +Tests: pdb2pka-test +Depends: @, python-networkx +Restrictions: allow-stderr -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pdb2pqr.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
