This is an automated email from the git hooks/post-receive script. moeller pushed a commit to branch master in repository bowtie2.
commit b1152c5a009dbd8a3ce3043c43c81c744bb1bdfa Author: Steffen Moeller <[email protected]> Date: Wed Jun 22 13:23:22 2016 +0200 Added EDAM file, introduced registry entries --- debian/upstream/edam | 47 +++++++++++++++++++++++++++++++++++++++++++++++ debian/upstream/metadata | 3 +++ 2 files changed, 50 insertions(+) diff --git a/debian/upstream/edam b/debian/upstream/edam new file mode 100644 index 0000000..e857ba0 --- /dev/null +++ b/debian/upstream/edam @@ -0,0 +1,47 @@ +topic: topic_0622 Genomics +scope: summary + function: operation_3211 Genome indexing + function: operation_0292 Sequence alignment generation + input: data_2975 Nucleic acid sequence (raw) + input: format_1929 FASTA + input: format_1930 FASTQ + output: data_1383 Sequence alignment (nucleic acid) + output: format_2573 SAM +scope: bowtie-build + function: operation_3212 Genome indexing (Burrows-Wheeler) + input: data_2975 Nucleic acid sequence (raw) + input: format_1929 FASTA + output: data_3210 Genome index + output: ??? Bowtie index format EBWT + output: ??? Bowtie long index format EBTWL +scope: bowtie-inspect + function: operation_1813 Sequence retrieval + function: operation_0304 Metadata retrieval + function: operation_0228 Data index analysis + input: data_3210 Genome index + input: ??? Bowtie index format EBWT + input: ??? Bowtie long index format EBTWL + output: data_2975 Nucleic acid sequence (raw) + output: format_1929 FASTA + output: format_1964 plain text format (unformatted) +scope: bowtie + function: operation_0350 Sequence database search (by sequence using word-based methods) + function: operation_0292 Sequence alignment generation + input: data_3210 Genome index + input: data_2975 Nucleic acid sequence (raw) + input: format_1964 plain text format (unformatted) + input: format_1929 FASTA + input: format_1930 FASTQ + output: data_1383 Sequence alignment (nucleic acid) + output: data_0867 Sequence alignment report + output: format_2573 SAM + output: ??? Bowtie alignment report format + +topic: topic_0622 Genomics +function: operation_3212 Genome indexing (Burrows-Wheeler) +function: operation_0292 Sequence alignment generation +input: data_2975 Nucleic acid sequence (raw) +input: format_1929 FASTA +input: format_1930 FASTQ +output: data_1383 Sequence alignment (nucleic acid) +output: format_2573 SAM diff --git a/debian/upstream/metadata b/debian/upstream/metadata index c23e0c5..2af21d6 100644 --- a/debian/upstream/metadata +++ b/debian/upstream/metadata @@ -11,3 +11,6 @@ Reference: DOI: 10.1038/nmeth.1923 PMID: 22388286 URL: http://www.nature.com/nmeth/journal/v9/n4/abs/nmeth.1923.html +Registry: + Name: SEQwiki + Entry: http://seqanswers.com/wiki/Bowtie -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bowtie2.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
