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commit 166e9b0e2e21c4436e4026b5176614b73b624f24 Author: Michael R. Crusoe <[email protected]> Date: Sat Jun 25 14:52:30 2016 -0700 initial Debianization --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 30 ++++++++++++++++++++++++++++++ debian/copyright | 20 ++++++++++++++++++++ debian/rules | 4 ++++ debian/source/format | 1 + debian/watch | 4 ++++ 7 files changed, 65 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..32cf412 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +r-bioc-dnacopy (1.46.0-1) UNRELEASED; urgency=medium + + * Initial release. (Closes: #828189) + + -- Michael R. Crusoe <[email protected]> Sat, 25 Jun 2016 13:58:30 -0700 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..1a1ad78 --- /dev/null +++ b/debian/control @@ -0,0 +1,30 @@ +Source: r-bioc-dnacopy +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Michael R. Crusoe <[email protected]> +Section: gnu-r +Priority: optional +Build-Depends: debhelper (>= 9), + cdbs, + r-base-dev, +Standards-Version: 3.9.8 +Homepage: http://www.bioconductor.org/packages/DNAcopy/ +Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/r-bioc-dnacopy.git +Vcs-Git: https://anonscm.debian.org/debian-med/r-bioc-dnacopy.git + +Package: r-bioc-dnacopy +Architecture: any +Depends: ${R:Depends}, + ${misc:Depends}, + ${shlibs:Depends} +Description: R package: DNA copy number data analysis + Implements the circular binary segmentation (CBS) algorithm to segment DNA + copy number data and identify genomic regions with abnormal copy number. + . + This package is for analyzing array DNA copy number data, which is usually + (but not always) called array Comparative Genomic Hybridization (array CGH) + data It implements a methodology for finding change-points in these data which + are points after which the (log) test over reference ratios have changed + location. This model is that the change-points correspond to positions where + the underlying DNA copy number has changed. Therefore, change-points can be + used to identify regions of gained and lost copy number. Also provided is a + function for making relevant plots of these data. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..15e4bd2 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,20 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: DNAcopy +Source: http://www.bioconductor.org/packages/release/bioc/html/DNAcopy.html + +Files: * +Copyright: Venkatraman E. Seshan <[email protected]> + Adam Olshen +License: GPL-2.0+ + +Files: debian/* +Copyright: © 2016 Michael R. Crusoe <[email protected]> +License: GPL-2.0+ + +License: GPL-2.0+ + This code may be freely distributed and modified under the + terms of the GNU General Public Licence. This should + be distributed with the code. + . + On Debian systems, the complete text of the GNU General Public License + can be found in `/usr/share/common-licenses/GPL-2'. diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..aeb12b3 --- /dev/null +++ b/debian/rules @@ -0,0 +1,4 @@ +#!/usr/bin/make -f + +debRreposname=bioc +include /usr/share/R/debian/r-cran.mk diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..bb9b363 --- /dev/null +++ b/debian/watch @@ -0,0 +1,4 @@ +version=3 + +opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \ + http://www.bioconductor.org/packages/release/bioc/html/DNAcopy.html .*/DNAcopy_([\d\.]+)\.tar\.gz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-dnacopy.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
