This is an automated email from the git hooks/post-receive script. cbk-guest pushed a commit to branch master in repository muscle.
commit 55da1c49b31fc6e513d16e3e07b7dc8071275065 Author: cbk-guest <[email protected]> Date: Thu Jun 30 06:14:07 2016 +0300 autopkgtest added --- debian/changelog | 10 ++++++++-- debian/example.fa | 42 ++++++++++++++++++++++++++++++++++++++++++ debian/muscle.examples | 1 + debian/tests/control | 3 +++ debian/tests/run-unit-test | 17 +++++++++++++++++ 5 files changed, 71 insertions(+), 2 deletions(-) diff --git a/debian/changelog b/debian/changelog index c05338c..dd5bc9b 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,10 +1,16 @@ muscle (1:3.8.31+dfsg-2) UNRELEASED; urgency=low - + + * Team upload + [ Steffen Moeller ] [ Steffen Moeller and Hervé Ménager] * Introducing EDAM ontology annotation in debian/upstream/edam - -- Steffen Moeller <[email protected]> Fri, 05 Feb 2016 12:28:26 +0100 + [ Canberk Koç ] + * autopkgtest added + * debian/example.fa added + + -- Canberk Koç <[email protected]> Thu, 30 Jun 2016 04:31:26 +0300 muscle (1:3.8.31+dfsg-1) unstable; urgency=low diff --git a/debian/example.fa b/debian/example.fa new file mode 100644 index 0000000..ff8aa63 --- /dev/null +++ b/debian/example.fa @@ -0,0 +1,42 @@ +>CALM_HUMAN +MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD +GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLT +DEEVDEMIREADIDGDGQVNYEEFVQMMTAK +>AF01595 Human telomerase reverse transcriptase (hTRT) mRNA +MPRAPRCRAVRSLLRSHYREVLPLATFVRRLGPQGWRLVQRGDPAAFRALVAQCLVCVP +WDARPPPAAPSFRQVSCLKELVARVLQRLCERGAKNVLAFGFALLDGARGGPPEAFTTS +VRSYLPNTVTDALRGSGAWGLLLRRVGDDVLVHLLARCALFVLVAPSCAYQVCGPPLYQ +LGAATQARPPPHASGPRRRLGCERAWNHSVREAGVPLGLPAPGARRRGGSASRSLPLPK +RPRRGAAPEPERTPVGQGSWAHPGRTRGPSDRGFCVVSPARPAEEATSLEGALSGTRHS +HPSVGRQHHAGPPSTSRPPRPWDTPCPPVYAETKHFLYSSGDKEQLRPSFLLSSLRPSL +TGARRLVETIFLGSRPWMPGTPRRLPRLPQRYWQMRPLFLELLGNHAQCPYGVLLKTHC +PLRAAVTPAAGVCAREKPQGSVAAPEEEDTDPRRLVQLLRQHSSPWQVYGFVRACLRRL +VPPGLWGSRHNERRFLRNTKKFISLGKHAKLSLQELTWKMSVRDCAWLRRSPGVGCVPA +AEHRLREEILAKFLHWLMSVYVVELLRSFFYVTETTFQKNRLFFYRKSVWSKLQSIGIR +QHLKRVQLRELSEAEVRQHREARPALLTSRLRFIPKPDGLRPIVNMDYVVGARTFRREK +RAERLTSRVKALFSVLNYERARRPGLLGASVLGLDDIHRAWRTFVLRVRAQDPPPELYF +VKVDVTGAYDTIPQDRLTEVIASIIKPQNTYCVRRYAVVQKAAHGHVRKAFKSHVSTLT +DLQPYMRQFVAHLQETSPLRDAVVIEQSSSLNEASSGLFDVFLRFMCHHAVRIRGKSYV +QCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLLVTPHLTHAKTFLR +TLVRGVPEYGCVVNLRKTVVNFPVEDEALGGTAFVQMPAHGLFPWCGLLLDTRTLEVQS +DYSSYARTSIRASLTFNRGFKAGRNMRRKLFGVLRLKCHSLFLDLQVNSLQTVCTNIYK +ILLLQAYRFHACVLQLPFHQQVWKNPTFFLRVISDTASLCYSILKAKNAGMSLGAKGAA +GPLPSEAVQWLCHQAFLLKLTRHRVTYVPLLGSLRTAQTQLSRKLPGTTLTALEAAANP +ALPSDFKTILD +>P53_HUMAN +MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGP +DEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAK +SVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE +RCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNS +SCMGGMNRRPILTIITLEDSSGNLLGRNSFEVHVCACPGRDRRTEEENLRKKGEPHHELP +PGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG +GSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD +>TUBE_DROME +MAYGWNGCGMGVQVNGSNGAIGLSSKYSRNTELRRVEDNDIYRLAKILDENSCWRKLMS +IIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDEAANRLPPDQSKSQMMIDEWK +TSGKLNERPTVGVLLQLLVQAELFSAADFVALDFLNESTPARPVDGPGALISLELLEEE +MEVDNEGLSLKYQSSTATLGADAQGSVGLNLDNFEKDIVRRDKSVPQPSGNTPPIAPPR +RQQRSTTNSNFATLTGTGTTSTTIPNVPNLTILNPSEQIQEPVLQPRPMNIPDLSILIS +NSGDLRATVSDNPSNRTSSTDPPNIPRITLLIDNSGDVNSRPNHAPAKASTATTPTASS +NNLPMISALNISKGSKETLRPESRSSSSSLSKDDDDDNDGEEDGEEEYPDAFLPNLSNS +EQQSSNNDSSLTTVTGTSGDNSFELTNDSSSTSNDDYACNIPDLSELQQ diff --git a/debian/muscle.examples b/debian/muscle.examples new file mode 100644 index 0000000..43d335e --- /dev/null +++ b/debian/muscle.examples @@ -0,0 +1 @@ +debian/example.fa diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..d2aa55a --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test new file mode 100644 index 0000000..dba274c --- /dev/null +++ b/debian/tests/run-unit-test @@ -0,0 +1,17 @@ +#!/bin/bash +set -e + +pkg="muscle" + +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` +fi + +cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP + +cd $AUTOPKGTEST_TMP + +muscle -in example.fa -out seqs.afa +muscle -in example.fa -clw + +echo "PASS" -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/muscle.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
