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commit 6d85887715a8bce6ff86b16f297958ff27ee60ad Author: Alba Crespi <[email protected]> Date: Tue Jul 5 11:26:48 2016 +0200 Cleaned debian directory --- debian/r-cran-rngtools.debhelper.log | 4 - debian/r-cran-rngtools.substvars | 1 - .../usr/lib/R/site-library/rngtools/DESCRIPTION | 25 ---- .../usr/lib/R/site-library/rngtools/INDEX | 8 - .../usr/lib/R/site-library/rngtools/Meta/Rd.rds | Bin 625 -> 0 bytes .../lib/R/site-library/rngtools/Meta/hsearch.rds | Bin 661 -> 0 bytes .../usr/lib/R/site-library/rngtools/Meta/links.rds | Bin 351 -> 0 bytes .../lib/R/site-library/rngtools/Meta/nsInfo.rds | Bin 312 -> 0 bytes .../lib/R/site-library/rngtools/Meta/package.rds | Bin 1057 -> 0 bytes .../lib/R/site-library/rngtools/Meta/vignette.rds | Bin 209 -> 0 bytes .../usr/lib/R/site-library/rngtools/NAMESPACE | 23 --- .../usr/lib/R/site-library/rngtools/R/rngtools | 27 ---- .../usr/lib/R/site-library/rngtools/R/rngtools.rdb | Bin 19127 -> 0 bytes .../usr/lib/R/site-library/rngtools/R/rngtools.rdx | Bin 682 -> 0 bytes .../usr/lib/R/site-library/rngtools/doc/index.html | 28 ---- .../site-library/rngtools/doc/rngtools-unitTests.R | 9 -- .../rngtools/doc/rngtools-unitTests.Rnw | 80 ---------- .../rngtools/doc/rngtools-unitTests.pdf | Bin 99069 -> 0 bytes .../usr/lib/R/site-library/rngtools/help/AnIndex | 31 ---- .../lib/R/site-library/rngtools/help/aliases.rds | Bin 320 -> 0 bytes .../usr/lib/R/site-library/rngtools/help/paths.rds | Bin 168 -> 0 bytes .../lib/R/site-library/rngtools/help/rngtools.rdb | Bin 23708 -> 0 bytes .../lib/R/site-library/rngtools/help/rngtools.rdx | Bin 291 -> 0 bytes .../lib/R/site-library/rngtools/html/00Index.html | 79 ---------- .../usr/lib/R/site-library/rngtools/html/R.css | 97 ------------ .../lib/R/site-library/rngtools/tests/runit.RNG.r | 133 ----------------- .../R/site-library/rngtools/tests/runit.RNGseq.r | 162 --------------------- .../R/site-library/rngtools/tests/runit.format.r | 103 ------------- 28 files changed, 810 deletions(-) diff --git a/debian/r-cran-rngtools.debhelper.log b/debian/r-cran-rngtools.debhelper.log deleted file mode 100644 index 2033868..0000000 --- a/debian/r-cran-rngtools.debhelper.log +++ /dev/null @@ -1,4 +0,0 @@ -dh_prep -dh_installdirs -dh_installdirs -dh_installdirs diff --git a/debian/r-cran-rngtools.substvars b/debian/r-cran-rngtools.substvars deleted file mode 100644 index d8ddfe3..0000000 --- a/debian/r-cran-rngtools.substvars +++ /dev/null @@ -1 +0,0 @@ -R:Depends=r-base-core (>= 3.1.1-1) diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/DESCRIPTION b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/DESCRIPTION deleted file mode 100644 index d61bf88..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/DESCRIPTION +++ /dev/null @@ -1,25 +0,0 @@ -Package: rngtools -Maintainer: Renaud Gaujoux <[email protected]> -Author: Renaud Gaujoux -Version: 1.2.4 -License: GPL-3 -Title: Utility functions for working with Random Number Generators -Description: This package contains a set of functions for working with - Random Number Generators (RNGs). In particular, it defines a generic - S4 framework for getting/setting the current RNG, or RNG data - that are embedded into objects for reproducibility. - Notably, convenient default methods greatly facilitate the way current - RNG settings can be changed. -URL: https://renozao.github.io/rngtools -BugReports: http://github.com/renozao/rngtools/issues -SCM: github:renozao, r-forge -Depends: R (>= 3.0.0), methods, pkgmaker (>= 0.20) -Imports: stringr, digest -Suggests: parallel, RUnit, knitr -Collate: 'rngtools-package.r' 'format.R' 'RNG.R' 'RNGseq.R' -VignetteBuilder: knitr -Packaged: 2014-03-06 13:11:11 UTC; renaud -NeedsCompilation: no -Repository: CRAN -Date/Publication: 2014-03-06 22:18:10 -Built: R 3.3.0; ; 2016-07-04 18:20:17 UTC; unix diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/INDEX b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/INDEX deleted file mode 100644 index 33481fb..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/INDEX +++ /dev/null @@ -1,8 +0,0 @@ -RNGseed Directly Getting or Setting the RNG Seed -RNGseq Generate Sequence of Random Streams -RNGstr Formatting RNG Information -checkRNG Checking RNG Differences in Unit Tests -getRNG Getting/Setting RNGs -rng.equal Comparing RNG Settings -rngtools Utility functions for working with Random - Number Generators diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/Rd.rds b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/Rd.rds deleted file mode 100644 index c0ebb78..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/Rd.rds and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/hsearch.rds b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/hsearch.rds deleted file mode 100644 index 3cc75b7..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/hsearch.rds and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/links.rds b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/links.rds deleted file mode 100644 index 61d8a1f..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/links.rds and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/nsInfo.rds b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/nsInfo.rds deleted file mode 100644 index c483acf..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/nsInfo.rds and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/package.rds b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/package.rds deleted file mode 100644 index 3c39793..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/package.rds and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/vignette.rds b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/vignette.rds deleted file mode 100644 index dd85a43..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/Meta/vignette.rds and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/NAMESPACE b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/NAMESPACE deleted file mode 100644 index 0dc79ce..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/NAMESPACE +++ /dev/null @@ -1,23 +0,0 @@ -export(.getRNG) -export(.setRNG) -export(RNGdigest) -export(RNGinfo) -export(RNGrecovery) -export(RNGseed) -export(RNGseq) -export(RNGseq_seed) -export(RNGstr) -export(RNGtype) -export(checkRNG) -export(getRNG) -export(getRNG1) -export(hasRNG) -export(nextRNG) -export(rng.equal) -export(rng1.equal) -export(setRNG) -export(showRNG) -import(digest) -import(methods) -import(pkgmaker) -import(stringr) diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/R/rngtools b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/R/rngtools deleted file mode 100644 index 3b65e3c..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/R/rngtools +++ /dev/null @@ -1,27 +0,0 @@ -# File share/R/nspackloader.R -# Part of the R package, http://www.R-project.org -# -# Copyright (C) 1995-2012 The R Core Team -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU General Public License as published by -# the Free Software Foundation; either version 2 of the License, or -# (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU General Public License for more details. -# -# A copy of the GNU General Public License is available at -# http://www.r-project.org/Licenses/ - -local({ - info <- loadingNamespaceInfo() - pkg <- info$pkgname - ns <- .getNamespace(as.name(pkg)) - if (is.null(ns)) - stop("cannot find namespace environment for ", pkg, domain = NA); - dbbase <- file.path(info$libname, pkg, "R", pkg) - lazyLoad(dbbase, ns, filter = function(n) n != ".__NAMESPACE__.") -}) diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/R/rngtools.rdb b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/R/rngtools.rdb deleted file mode 100644 index 132599f..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/R/rngtools.rdb and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/R/rngtools.rdx b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/R/rngtools.rdx deleted file mode 100644 index a7f5d12..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/R/rngtools.rdx and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/index.html b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/index.html deleted file mode 100644 index b30f527..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/index.html +++ /dev/null @@ -1,28 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd";> -<html xmlns="http://www.w3.org/1999/xhtml";> -<head><title>R: Vignettes and other documentation</title> -<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> -<link rel="stylesheet" type="text/css" href="/doc/html/R.css" /> -</head><body> -<h1> Vignettes and other documentation -<img class="toplogo" src="/doc/html/Rlogo.svg" alt="[R logo]" /> -</h1> -<hr/> -<div style="text-align: center;"> -<a href="/doc/html/index.html"><img class="arrow" src="/doc/html/up.jpg" alt="[Top]" /></a> -</div> -<h2>Vignettes from package 'rngtools'</h2> -<table width="100%"> -<col style="width: 22%;" /> -<col style="width: 2%;" /> -<col style="width: 50%;" /> -<col style="width: 8%;" /> -<col style="width: 8%;" /> -<col style="width: 8%;" /> -<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/rngtools/doc/rngtools-unitTests.pdf">rngtools::rngtools-unitTests</a></td> -<td></td><td valign="top">rngtools-unitTests</td> -<td valign="top"><a href="../../../library/rngtools/doc/rngtools-unitTests.pdf">PDF</a></td> -<td valign="top"><a href="../../../library/rngtools/doc/rngtools-unitTests.Rnw">source</a></td> -<td valign="top" style="white-space: nowrap"><a href="../../../library/rngtools/doc/rngtools-unitTests.R">R code</a></td></tr> -</table> -</body></html> diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/rngtools-unitTests.R b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/rngtools-unitTests.R deleted file mode 100644 index e66beab..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/rngtools-unitTests.R +++ /dev/null @@ -1,9 +0,0 @@ - -## ----setup, include=FALSE------------------------------------------------ -pkg <- 'rngtools' -require( pkg, character.only=TRUE ) -prettyVersion <- packageDescription(pkg)$Version -prettyDate <- format(Sys.Date(), '%B %e, %Y') -authors <- packageDescription(pkg)$Author - - diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/rngtools-unitTests.Rnw b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/rngtools-unitTests.Rnw deleted file mode 100644 index ff4e04d..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/rngtools-unitTests.Rnw +++ /dev/null @@ -1,80 +0,0 @@ - -\documentclass[10pt]{article} -%\VignetteDepends{knitr} -%\VignetteIndexEntry{rngtools-unitTests} -%\VignetteCompiler{knitr} -%\VignetteEngine{knitr::knitr} -\usepackage{vmargin} -\setmargrb{0.75in}{0.75in}{0.75in}{0.75in} - -<<setup, include=FALSE>>= -pkg <- 'rngtools' -require( pkg, character.only=TRUE ) -prettyVersion <- packageDescription(pkg)$Version -prettyDate <- format(Sys.Date(), '%B %e, %Y') -authors <- packageDescription(pkg)$Author -@ - -\usepackage[colorlinks]{hyperref} -\author{\Sexpr{authors}} -\title{\texttt{\Sexpr{pkg}}: Unit testing results\footnote{Vignette computed on Thu Mar 6 11:45:50 2014}} -\date{\texttt{\Sexpr{pkg}} version \Sexpr{prettyVersion} as of \Sexpr{prettyDate}} -\begin{document} -\maketitle - -\section{Details} -\begin{verbatim} - -RUNIT TEST PROTOCOL -- Thu Mar 6 11:45:50 2014 -*********************************************** -Number of test functions: 6 -Number of errors: 0 -Number of failures: 0 - - -1 Test Suite : -package:rngtools - 6 test functions, 0 errors, 0 failures - - - -Details -*************************** -Test Suite: package:rngtools -Test function regexp: ^test. -Test file regexp: ^runit.*.[rR]$ -Involved directory: -/tmp/Rpkglib_51e6234a85cc/rngtools/tests ---------------------------- -Test file: /tmp/Rpkglib_51e6234a85cc/rngtools/tests/runit.format.r -test.RNGdigest: (30 checks) ... OK (0.01 seconds) -test.RNGtype: (22 checks) ... OK (0.01 seconds) ---------------------------- -Test file: /tmp/Rpkglib_51e6234a85cc/rngtools/tests/runit.RNG.r -test.getRNG: (18 checks) ... OK (0 seconds) -test.setRNG: (34 checks) ... OK (0.01 seconds) ---------------------------- -Test file: /tmp/Rpkglib_51e6234a85cc/rngtools/tests/runit.RNGseq.r -test.RNGseq: (51 checks) ... OK (0.01 seconds) -test.RNGseq_seed: (75 checks) ... OK (0 seconds) - -Total execution time -*************************** - user system elapsed - 0.234 0.001 0.234 - -\end{verbatim} - -\section*{Session Information} -\begin{itemize}\raggedright - \item R Under development (unstable) (2014-03-02 r65102), \verb|x86_64-unknown-linux-gnu| - \item Locale: \verb|LC_CTYPE=en_US.UTF-8|, \verb|LC_NUMERIC=C|, \verb|LC_TIME=en_US.UTF-8|, \verb|LC_COLLATE=en_US.UTF-8|, \verb|LC_MONETARY=en_US.UTF-8|, \verb|LC_MESSAGES=en_US.UTF-8|, \verb|LC_PAPER=en_US.UTF-8|, \verb|LC_NAME=C|, \verb|LC_ADDRESS=C|, \verb|LC_TELEPHONE=C|, \verb|LC_MEASUREMENT=en_US.UTF-8|, \verb|LC_IDENTIFICATION=C| - \item Base packages: base, datasets, graphics, grDevices, methods, - parallel, stats, utils - \item Other packages: pkgmaker~0.20, registry~0.2, rngtools~1.2.4, - RUnit~0.4.26, stringr~0.6.2 - \item Loaded via a namespace (and not attached): codetools~0.2-8, - digest~0.6.4, tools~3.1.0, xtable~1.7-1 -\end{itemize} - -\end{document} - diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/rngtools-unitTests.pdf b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/rngtools-unitTests.pdf deleted file mode 100644 index 15f40de..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/doc/rngtools-unitTests.pdf and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/AnIndex b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/AnIndex deleted file mode 100644 index 37d7bbd..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/AnIndex +++ /dev/null @@ -1,31 +0,0 @@ -rngtools-package rngtools -.getRNG rng -.getRNG,ANY-method rng -.getRNG,list-method rng -.getRNG,missing-method rng -.getRNG,numeric-method rng -.getRNG-methods rng -.setRNG rng -.setRNG,character-method rng -.setRNG,numeric-method rng -.setRNG-methods rng -checkRNG uchecks -getRNG rng -getRNG1 rng -getRNG1,ANY-method rng -getRNG1-methods rng -hasRNG rng -nextRNG rng -rng.equal rngcmp -rng1.equal rngcmp -RNGdigest RNGstr -RNGinfo RNGstr -RNGrecovery RNGseed -RNGseed RNGseed -RNGseq RNGseq -RNGseq_seed RNGseq -RNGstr RNGstr -rngtools rngtools -RNGtype RNGstr -setRNG rng -showRNG RNGstr diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/aliases.rds b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/aliases.rds deleted file mode 100644 index abedd7a..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/aliases.rds and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/paths.rds b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/paths.rds deleted file mode 100644 index 2ff4b4b..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/paths.rds and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/rngtools.rdb b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/rngtools.rdb deleted file mode 100644 index 5541437..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/rngtools.rdb and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/rngtools.rdx b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/rngtools.rdx deleted file mode 100644 index fe2a5f9..0000000 Binary files a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/help/rngtools.rdx and /dev/null differ diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/html/00Index.html b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/html/00Index.html deleted file mode 100644 index cd2fabd..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/html/00Index.html +++ /dev/null @@ -1,79 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd";> -<html xmlns="http://www.w3.org/1999/xhtml";> -<head><title>R: Utility functions for working with Random Number Generators</title> -<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> -<link rel="stylesheet" type="text/css" href="R.css" /> -</head><body> -<h1> Utility functions for working with Random Number Generators -<img class="toplogo" src="../../../doc/html/Rlogo.svg" alt="[R logo]" /> -</h1> -<hr/> -<div style="text-align: center;"> -<a href="../../../doc/html/packages.html"><img class="arrow" src="../../../doc/html/left.jpg" alt="[Up]" /></a> -<a href="../../../doc/html/index.html"><img class="arrow" src="../../../doc/html/up.jpg" alt="[Top]" /></a> -</div><h2>Documentation for package ‘rngtools’ version 1.2.4</h2> - -<ul><li><a href="../DESCRIPTION">DESCRIPTION file</a>.</li> -<li><a href="../doc/index.html">User guides, package vignettes and other documentation.</a></li> -</ul> - -<h2>Help Pages</h2> - - -<table width="100%"> -<tr><td style="width: 25%;"><a href="rngtools.html">rngtools-package</a></td> -<td>Utility functions for working with Random Number Generators</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">.getRNG</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">.getRNG-method</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">.getRNG-methods</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">.setRNG</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">.setRNG-method</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">.setRNG-methods</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="uchecks.html">checkRNG</a></td> -<td>Checking RNG Differences in Unit Tests</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">getRNG</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">getRNG1</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">getRNG1-method</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">getRNG1-methods</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">hasRNG</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">nextRNG</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="rngcmp.html">rng.equal</a></td> -<td>Comparing RNG Settings</td></tr> -<tr><td style="width: 25%;"><a href="rngcmp.html">rng1.equal</a></td> -<td>Comparing RNG Settings</td></tr> -<tr><td style="width: 25%;"><a href="RNGstr.html">RNGdigest</a></td> -<td>Formatting RNG Information</td></tr> -<tr><td style="width: 25%;"><a href="RNGstr.html">RNGinfo</a></td> -<td>Formatting RNG Information</td></tr> -<tr><td style="width: 25%;"><a href="RNGseed.html">RNGrecovery</a></td> -<td>Directly Getting or Setting the RNG Seed</td></tr> -<tr><td style="width: 25%;"><a href="RNGseed.html">RNGseed</a></td> -<td>Directly Getting or Setting the RNG Seed</td></tr> -<tr><td style="width: 25%;"><a href="RNGseq.html">RNGseq</a></td> -<td>Generate Sequence of Random Streams</td></tr> -<tr><td style="width: 25%;"><a href="RNGseq.html">RNGseq_seed</a></td> -<td>Generate Sequence of Random Streams</td></tr> -<tr><td style="width: 25%;"><a href="RNGstr.html">RNGstr</a></td> -<td>Formatting RNG Information</td></tr> -<tr><td style="width: 25%;"><a href="rngtools.html">rngtools</a></td> -<td>Utility functions for working with Random Number Generators</td></tr> -<tr><td style="width: 25%;"><a href="RNGstr.html">RNGtype</a></td> -<td>Formatting RNG Information</td></tr> -<tr><td style="width: 25%;"><a href="rng.html">setRNG</a></td> -<td>Getting/Setting RNGs</td></tr> -<tr><td style="width: 25%;"><a href="RNGstr.html">showRNG</a></td> -<td>Formatting RNG Information</td></tr> -</table> -</body></html> diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/html/R.css b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/html/R.css deleted file mode 100644 index f10f5ea..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/html/R.css +++ /dev/null @@ -1,97 +0,0 @@ -body { - background: white; - color: black; -} - -a:link { - background: white; - color: blue; -} - -a:visited { - background: white; - color: rgb(50%, 0%, 50%); -} - -h1 { - background: white; - color: rgb(55%, 55%, 55%); - font-family: monospace; - font-size: x-large; - text-align: center; -} - -h2 { - background: white; - color: rgb(40%, 40%, 40%); - font-family: monospace; - font-size: large; - text-align: center; -} - -h3 { - background: white; - color: rgb(40%, 40%, 40%); - font-family: monospace; - font-size: large; -} - -h4 { - background: white; - color: rgb(40%, 40%, 40%); - font-family: monospace; - font-style: italic; - font-size: large; -} - -h5 { - background: white; - color: rgb(40%, 40%, 40%); - font-family: monospace; -} - -h6 { - background: white; - color: rgb(40%, 40%, 40%); - font-family: monospace; - font-style: italic; -} - -img.toplogo { - width: 4em; - vertical-align: middle; -} - -img.arrow { - width: 30px; - height: 30px; - border: 0; -} - -span.acronym { - font-size: small; -} - -span.env { - font-family: monospace; -} - -span.file { - font-family: monospace; -} - -span.option{ - font-family: monospace; -} - -span.pkg { - font-weight: bold; -} - -span.samp{ - font-family: monospace; -} - -div.vignettes a:hover { - background: rgb(85%, 85%, 85%); -} diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/tests/runit.RNG.r b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/tests/runit.RNG.r deleted file mode 100644 index fddb18e..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/tests/runit.RNG.r +++ /dev/null @@ -1,133 +0,0 @@ -# Unit test for getRNG -# -# Author: Renaud Gaujoux -############################################################################### - -library(stringr) - -test.getRNG <- function(){ - - RNGkind('default', 'default') - on.exit( RNGrecovery() ) - - checker <- function(x, y, ..., msg=NULL, drawRNG=TRUE){ - - if( drawRNG ) runif(10) - fn <- getRNG - oldRNG <- RNGseed() - if( !missing(x) ){ - d <- fn(x, ...) - cl <- str_c(class(x), '(', length(x), ')') - }else{ - d <- fn() - cl <- 'MISSING' - } - newRNG <- RNGseed() - .msg <- function(x) paste(cl, ':', x, '[', msg, ']') - checkIdentical(oldRNG, newRNG, .msg("does not change RNG")) - checkIdentical(d, y, .msg("result is correct") ) - } - - set.seed(123456) - seed123456 <- .Random.seed - checker(, seed123456, msg="No arguments: returns .Random.seed", drawRNG=FALSE) - checker(123456, seed123456, msg="Single numeric argument: returns .Random.seed as it would be after setting the seed") - checker(123456, 123456, num.ok=TRUE, msg="Single numeric argument + num.ok: returns argument unchanged") - checker(.Random.seed, .Random.seed, msg="Integer seed argument: returns its argument unchanged") - checker(as.numeric(.Random.seed), .Random.seed, msg="Numeric seed argument: returns its argument as an integer vector") - checker(2:3, 2:3, msg="Integer INVALID seed vector argument: returns its argument unchanged") - checker(c(2,3), c(2L,3L), msg="Numeric INVALID seed vector argument: returns its argument as an integer vector") - checker(1L, 1L, msg="Single integer = Encoded RNG kind: returns it unchanged") - checker(1000L, 1000L, msg="Invalid single integer = Encoded RNG kind: returns it unchanged") - -} - -test.setRNG <- function(){ - - RNGkind('default', 'default') - on.exit( RNGrecovery() ) - - checker <- function(x, y, tset, drawRNG=TRUE){ - - on.exit( RNGrecovery() ) - - if( drawRNG ) runif(10) - oldRNG <- RNGseed() - d <- force(x) - newRNG <- RNGseed() - - msg <- function(x, ...) paste(tset, ':', ...) - checkTrue(!identical(oldRNG, newRNG), msg("changes RNG")) - checkIdentical(getRNG(), y, msg("RNG is correctly set") ) - checkIdentical(d, oldRNG, msg("returns old RNG") ) - } - - set.seed(123456) - refseed <- .Random.seed - checker(setRNG(123456), refseed, "Single numeric: sets current RNG with seed") - - # setting kind with a character string - set.seed(123) - RNGkind('Mar') - refseed <- .Random.seed - RNGrecovery() - set.seed(123) - checker(setRNG('Mar'), refseed, "Single character: change RNG kind", drawRNG=FALSE) - - # setting kind with a character string - set.seed(123) - RNGkind('Mar', 'Ahrens') - refseed <- .Random.seed - RNGrecovery() - set.seed(123) - checker(setRNG('Mar', 'Ahrens'), refseed, "Two character strings: change RNG kind and normal kind", drawRNG=FALSE) - RNGrecovery() - set.seed(123) - checker(setRNG(c('Mar', 'Ahrens')), refseed, "2-long character vector: change RNG kind and normal kind", drawRNG=FALSE) - - # setting kind - set.seed(123456, kind='Mar') - refseed <- .Random.seed - checker(setRNG(123456, kind='Mar'), refseed, "Single numeric + kind: change RNG kind + set seed") - - # setting Nkind - set.seed(123456, normal.kind='Ahrens') - refseed <- .Random.seed - checker(setRNG(123456, normal.kind='Ahrens'), refseed - , "Single numeric + normal.kind: change RNG normal kind + set seed") - - # setting kind and Nkind - set.seed(123456, kind='Mar', normal.kind='Ahrens') - refseed <- .Random.seed - checker(setRNG(123456, kind='Mar', normal.kind='Ahrens'), refseed - , "Single numeric + kind + normal.kind: change RNG all kinds + set seed") - - # with seed length > 1 - refseed <- as.integer(c(201, 0, 0)) - checker(setRNG(refseed), refseed, "numeric vector: directly set seed") - - refseed <- .Random.seed - checkException( setRNG(2:3), "numeric vector: throws an error if invalid value for .Random.seed") - checkIdentical( .Random.seed, refseed, ".Random.seed is not changed in case of an error in setRNG") - - oldRNG <- getRNG() - checkException(setRNG(1234L), "Error with invalid integer seed") - checkIdentical(oldRNG, getRNG(), "RNG still valid after error") - checkException(setRNG(123L), "Error with invalid RNG kind") - checkIdentical(oldRNG, getRNG(), "RNG still valid after error") - - # changes in R >= 3.0.2: invalid seeds only throw warning - if( testRversion('> 3.0.1') ){ - oldRNG <- getRNG() - checkWarning(setRNG(1234L, check = FALSE), "\\.Random\\.seed.* is not .* valid" - , "Invalid integer kind: Warning only if check = FALSE") - checkIdentical(1234L, getRNG(), "RNG has new invalid integer value") - setRNG(oldRNG) - checkWarning(setRNG(123L, check = FALSE), "\\.Random\\.seed.* is not .* valid" - , "Invalid kind: Warning only if check = FALSE") - checkIdentical(123L, getRNG(), "RNG has new invalid RNG kind") - - } - -} - diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/tests/runit.RNGseq.r b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/tests/runit.RNGseq.r deleted file mode 100644 index 674012e..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/tests/runit.RNGseq.r +++ /dev/null @@ -1,162 +0,0 @@ -# Unit tets for RNGseq -# -# Author: Renaud Gaujoux -############################################################################### - -library(parallel) - -test.RNGseq_seed <- function(){ - - # actual testing function - .test_loc <- function(.msg, ..., .change=FALSE){ - msg <- function(...) paste(.msg, ':', ...) - os <- RNGseed() - on.exit(RNGseed(os)) - s <- RNGseq_seed(...) - checkTrue(length(s) == 7L && s[1] %% 100 == 7L, msg("RNGseq_seed returns a value of .Random.seed for L'Ecuyer-CMRG")) - checkIdentical(RNGseed()[1], os[1], msg("RNGseq_seed does not change the type of RNG")) - - if( !.change ) checkIdentical(RNGseed(), os, msg("RNGseq_seed does not change the value of .Random.seed")) - else checkTrue( !identical(RNGseed(), os), msg("RNGseq_seed changes the value of .Random.seed")) - s - } - - # test in two RNG settings: default and L'Ecuyer - .test <- function(.msg, ..., ss=NULL, .change=FALSE, Dchange=.change, Lchange=.change){ - os <- RNGseed() - on.exit(RNGseed(os)) - - # default RNG - RNGkind('default') - if( !is.null(ss) ) set.seed(ss) - s1 <- .test_loc(paste(.msg, '- default'), ..., .change=Dchange) - - RNGkind("L'Ecuyer") - if( !is.null(ss) ) set.seed(ss) - s2 <- .test_loc(paste(.msg, "- CMRG"), ..., .change=Lchange) - - list(s1, s2) - } - - os <- RNGseed() - on.exit(RNGseed(os)) - - RNGkind('default', 'default') - - # test different arguments - s1 <- .test("seed=missing", ss=1, Dchange=TRUE, Lchange=FALSE) - runif(10) - s2 <- .test("seed=NULL", NULL, ss=1, Dchange=TRUE, Lchange=FALSE) - checkIdentical(s1, s2, "set.seed(1) + seed=missing and seed=NULL return identical results") - - # doRNG seed with single numeric - runif(10) - s3 <- .test("seed=single numeric", 1) - checkIdentical(s1[[1]], s3[[1]], "v1.4 - set.seed(1) + seed=missing and seed=1 return identical results when current RNG is NOT CMRG") - checkIdentical(s1[[2]], s3[[2]], "v1.4 - set.seed(1) + seed=missing and seed=1 return identical results when current RNG is CMRG") - checkTrue( !identical(s1[[1]], s1[[2]]), "v1.4 - set.seed(1) + seed=missing return NON identical results in different RNG settings") - checkTrue( !identical(s3[[1]], s3[[2]]), "v1.4 - seed=num return NON identical results in different RNG settings") - - # version < 1.4 -# doRNGversion("1.3.9999") - s1 <- .test("v1.3 - seed=missing", ss=1, Dchange=TRUE, Lchange=TRUE, version=1) - s3 <- .test("v1.3 - seed=single numeric", 1, version=1) - checkIdentical(s1[[1]], s3[[1]], "v1.3 - set.seed(1) + seed=missing and seed=1 return identical results when current RNG is NOT CMRG") - checkTrue( !identical(s1[[2]], s3[[2]]), "v1.3 - set.seed(1) + seed=missing and seed=1 return NON identical results when current RNG is CMRG") - checkTrue( !identical(s1[[1]], s1[[2]]), "v1.3 - set.seed(1) + seed=missing return NON identical results in different RNG settings") - checkTrue( !identical(s3[[1]], s3[[2]]), "v1.4 - seed=num return NON identical results in different RNG settings") -# doRNGversion(NULL) - ## - - .test("seed=single integer", 10L) - # directly set doRNG seed with a 6-length - .test("seed=6-length integer", 1:6) - .test("seed=6-length numeric", as.numeric(1:6)) - s <- 1:6 - checkIdentical(RNGseq_seed(s)[2:7], s, "RNGseq_seed(6-length) returns stream to the given value") - # directly set doRNG seed with a full 7-length .Random.seed - .test("seed=7-length integer", c(407L,1:6)) - .test("seed=7-length numeric", as.numeric(c(107L,1:6))) - s <- c(407L,1:6) - checkIdentical(RNGseq_seed(s), s, "RNGseq_seed(7-length) returns complete seed with the given value") - - # errors - os <- RNGseed() - checkException(RNGseq_seed(NA), "seed=NA throws an exception") - checkIdentical(os, RNGseed(), "RNGseq_seed(NA) does not change the value of .Random.seed [error]") - - # Current CMRG is L'Ecuyer - RNGkind("L'Ecuyer") - set.seed(456) - s <- RNGseed() - r <- RNGseq_seed(NULL) - checkIdentical(s, r, "Current is CMRG: seed=NULL return current stream") - runif(10) - checkIdentical(s, RNGseq_seed(456), "Current is CMRG: seed=numeric return stream seeded with value") - -} - -test.RNGseq <- function(){ - - os <- RNGseed() - on.exit(RNGseed(os)) - - # actual testing function - .test_loc <- function(.msg, n, ..., .list=TRUE, .change=FALSE){ - msg <- function(...) paste(.msg, ':', ...) - os <- RNGseed() - on.exit(RNGseed(os)) - - s <- RNGseq(n, ...) - - if( !.change ) checkIdentical(RNGseed(), os, msg("the value of .Random.seed is not changed")) - else checkTrue( !identical(RNGseed(), os), msg("the value of .Random.seed does change")) - - if( .list ) checkTrue(is.list(s), msg("result is a list")) - else{ - checkTrue(is.integer(s), msg("result is an integer vector")) - s <- list(s) - } - - checkTrue(length(s) == n, msg("result has correct length")) - checkTrue(all(sapply(s, length) == 7L), msg("each element has length 7")) - checkTrue(all(sapply(s, function(x) x[1] %% 100) == 7L), msg("each element has correct RNG kind")) - s - } - - .test <- function(msg, n, ...){ - set.seed(1) - s1 <- .test_loc(paste(msg, '- no seed'), n, ..., .change=TRUE) - runif(1) - s2 <- .test_loc(paste(msg, '- seed=1'), n, 1, ..., .change=FALSE) - #checkIdentical(s1, s2, paste(msg, " - set.seed(1) + no seed is identical to seed=1")) - .test_loc(paste(msg, '- seed=1:6'), n, 1:6, ...) - } - .test("n=1", 1, .list=FALSE) - .test("n=2", 2) - .test("n=5", 5) - - # with full list - s <- RNGseq(3) - checkIdentical(RNGseq(length(s), s), s, "If passing a complete list: returns the list itself") - s3 <- RNGseq(5) - s <- structure(s, rng=s3) - checkIdentical(RNGseq(length(s3), s), s3, "If passing a complete list in rng S3 slot: returns the complete slot") - # - - # Current RNG is CMRG - set.seed(456, "L'Ec") - s <- .Random.seed - ref <- list(s, nextRNGStream(s), nextRNGStream(nextRNGStream(s))) - rs <- RNGseq(3, 456) - checkIdentical(rs, ref, "Current RNG is CMRG: RNGseq(n, num) returns RNG streams that start with stream as set.seed") - checkIdentical(s, .Random.seed, "Current RNG is CMRG: RNGseq(n, num) did not change random seed") - - runif(10) - s <- .Random.seed - ref <- list(s, nextRNGStream(s), nextRNGStream(nextRNGStream(s))) - rs2 <- RNGseq(3) - checkIdentical(rs2, ref, "Current RNG is CMRG: RNGseq(n) returns RNG streams that start with current stream") - checkIdentical(.Random.seed, nextRNGStream(tail(rs2,1)[[1]]), "Current RNG is CMRG: RNGseq(n) changes current random seed to next stream of last stream in sequence") - -} diff --git a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/tests/runit.format.r b/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/tests/runit.format.r deleted file mode 100644 index 7e94f91..0000000 --- a/debian/r-cran-rngtools/usr/lib/R/site-library/rngtools/tests/runit.format.r +++ /dev/null @@ -1,103 +0,0 @@ -# Unit tests for RNG formatting functions -# -# Author: Renaud Gaujoux -############################################################################### - -library(stringr) -library(pkgmaker) - -checkFun <- function(fn, name){ - - function(x, ...){ - - oldRNG <- RNGseed() - if( !missing(x) ){ - d <- fn(x) - obj <- getRNG(x) - cl <- class(x) - }else{ - d <- fn() - obj <- getRNG() - cl <- 'MISSING' - } - newRNG <- RNGseed() - msg <- function(x, ...) paste(name, '-', cl, ':', x, '[', ..., ']') - checkIdentical(oldRNG, newRNG, msg("does not change RNG", ...)) - - # - checkTrue( isString(d), msg("result is a character string", ...)) - checkIdentical(d, fn(obj), msg("digest is from the RNG setting", ...)) - - } -} - -test.RNGdigest <- function(){ - - RNGkind('default', 'default') - on.exit( RNGrecovery() ) - - fn <- c('RNGdigest', 'RNGstr') - sapply(fn, function(f){ - fn <- getFunction(f, where='package:rngtools') - checker <- checkFun(fn, f) - - checker() - checker(1234) - checker(1:3, 'Valid seed') - checker(2:3, 'Invalid seed') - x <- list(10, rng=c(401L, 1L, 1L)) - checker(x, 'list with rng slot') - - }) - TRUE -} - -checkRNGtype <- function(x, ..., expL=2L){ - - fn <- RNGtype - oldRNG <- getRNG() - if( !missing(x) ){ - d <- fn(x) - obj <- getRNG(x) - cl <- str_c(class(x), '(', length(x), ')') - }else{ - d <- fn() - obj <- getRNG() - cl <- 'MISSING' - } - newRNG <- getRNG() - msg <- function(x, ...) paste(cl, ':', x, '[', ..., ']') - checkIdentical(oldRNG, newRNG, msg("does not change RNG", ...)) - - # - checkTrue( is.character(d), msg("result is a character vector", ...) ) - checkIdentical( length(d), expL, msg("result has correct length (", expL, ")", ...) ) - -} - -test.RNGtype <- function(){ - - RNGkind('default', 'default') - on.exit( RNGrecovery() ) - checker <- checkRNGtype - - checker() - checker(1234, 'Valid single numeric seed') - checker(1:3, 'Valid seed') - checker(402L, 'Valid encoded kind') - checkTrue( !identical(RNGtype(402), RNGtype(402L)), "Single integer and real number does not give the same result") - x <- list(10, rng=c(401L, 1L, 1L)) - checker(x, 'list with rng slot') - - # errors - oldRNG <- getRNG() - checkException(RNGtype(2:3), "Error with invalid length seed") - checkIdentical(oldRNG, getRNG(), "RNG still valid after error") - # - - oldRNG <- getRNG() - checkException(RNGtype(123L), "Error with invalid RNG kind") - checkIdentical(oldRNG, getRNG(), "RNG still valid after error") - checkException(RNGtype(1234L), "Error with invalid RNG integer") - checkIdentical(oldRNG, getRNG(), "RNG still valid after error") -} -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-rngtools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
