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commit 1a921ff7ad446f01f7cfbe2172e0cee6ad4e4268 Merge: 3739447 cba6d9c Author: Sascha Steinbiss <[email protected]> Date: Mon Jul 11 08:36:28 2016 +0000 Merge tag 'upstream/3.8.2+dfsg' Upstream version 3.8.2+dfsg VERSION | 2 +- changelog.html | 4 + configs/debruijn/path_extend/pe_params.info | 8 +- ext/src/ssw/ssw.c | 3 +- manual.html | 40 ++++---- metaspades.py | 4 +- plasmidspades.py | 4 +- spades.py | 4 +- spades_init.py | 29 ++++-- src/cmake/pack.cmake | 4 +- .../algorithms/path_extend/extension_chooser.hpp | 108 +++++++++++++-------- .../algorithms/path_extend/loop_traverser.hpp | 15 ++- .../algorithms/path_extend/overlap_analysis.hpp | 8 +- .../algorithms/path_extend/path_extend_launch.hpp | 2 +- src/modules/algorithms/path_extend/pe_io.hpp | 28 +++++- .../simplification/complex_tip_clipper.hpp | 11 ++- src/modules/paired_info/pair_info_improver.hpp | 15 +-- src/projects/hammer/hammer_tools.cpp | 1 + src/projects/spades/distance_estimation.cpp | 4 +- src/projects/spades/main.cpp | 3 +- src/spades_pipeline/spades_logic.py | 24 +++-- src/spades_pipeline/support.py | 3 + 22 files changed, 207 insertions(+), 117 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/spades.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
