This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository bioperl.
commit 95b6743ba2f90151aa2c138bae19ca0c3eee8598 Author: Charles Plessy <[email protected]> Date: Mon Jul 11 21:51:40 2016 +0900 Delete previously applied patches. --- debian/patches/BioPerl-1.006924-RT106756.patch | 21 --------- debian/patches/fix_examples_perl_location | 60 -------------------------- debian/patches/series | 3 -- 3 files changed, 84 deletions(-) diff --git a/debian/patches/BioPerl-1.006924-RT106756.patch b/debian/patches/BioPerl-1.006924-RT106756.patch deleted file mode 100644 index d9ce3d9..0000000 --- a/debian/patches/BioPerl-1.006924-RT106756.patch +++ /dev/null @@ -1,21 +0,0 @@ -From b1c2d3e9b1eb9f5a20f17b36be7659ba2bf642e0 Mon Sep 17 00:00:00 2001 -From: Slaven Rezic <[email protected]> -Date: Fri, 8 Apr 2016 08:27:25 +0200 -Bug-Debian: https://bugs.debian.org/825429 -Subject: [PATCH] fix my in my redeclaration (RT #106756) - ---- - Bio/Tools/Alignment/Consed.pm | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - ---- a/Bio/Tools/Alignment/Consed.pm -+++ b/Bio/Tools/Alignment/Consed.pm -@@ -1709,7 +1709,7 @@ Recursion is kewl, but this sub should l - - - sub reverse_recurse($$) { -- my ($r_source,my $r_destination) = @_; -+ my ($r_source,$r_destination) = @_; - if (!@$r_source) { - return $r_destination; - } diff --git a/debian/patches/fix_examples_perl_location b/debian/patches/fix_examples_perl_location deleted file mode 100644 index 3ed1dd2..0000000 --- a/debian/patches/fix_examples_perl_location +++ /dev/null @@ -1,60 +0,0 @@ -Subject: fix perl location -Description: wrong shebang perl location -Author: Olivier Sallou <[email protected]> -Last-Updated: 02/03/2012 ---- a/examples/db/getGenBank.pl -+++ b/examples/db/getGenBank.pl -@@ -1,4 +1,4 @@ --#!/usr/local/bin/perl -+#!/usr/bin/perl - # - # How to retrieve GenBank entries over the Web - # ---- a/examples/db/get_seqs.pl -+++ b/examples/db/get_seqs.pl -@@ -1,4 +1,4 @@ --#!/usr/local/bin/perl -+#!/usr/bin/perl - use strict; - use vars qw($USAGE); - use Carp; ---- a/examples/generate_random_seq.pl -+++ b/examples/generate_random_seq.pl -@@ -1,4 +1,4 @@ --#!/bin/perl -+#!/usr/bin/perl - use strict; - use vars qw($USAGE); - ---- a/examples/searchio/psiblast_features.pl -+++ b/examples/searchio/psiblast_features.pl -@@ -1,4 +1,4 @@ --#!/usr/local/bin/perl -+#!/usr/bin/perl - - # Example usage of a SearchIO::psiblast parser of traditional format Blast - # and PSI-Blast reports. ---- a/examples/structure/structure-io.pl -+++ b/examples/structure/structure-io.pl -@@ -1,4 +1,4 @@ --#!/bin/perl -+#!/usr/bin/perl - # Getting Entry, Chain, Residue, and Atom objects given a PDB file - - use Bio::Structure::IO; ---- a/examples/tk/hitdisplay.pl -+++ b/examples/tk/hitdisplay.pl -@@ -1,4 +1,4 @@ --#!/usr/local/bin/perl -+#!/usr/bin/perl - # - # PROGRAM : hitdisplay.pl - # PURPOSE : Demonstrate Bio::Tk::HitDisplay ---- a/examples/tools/gb_to_gff.pl -+++ b/examples/tools/gb_to_gff.pl -@@ -1,4 +1,4 @@ --#!/usr/local/bin/perl -+#!/usr/bin/perl - use strict; - - use Bio::Tools::GFF; diff --git a/debian/patches/series b/debian/patches/series deleted file mode 100644 index e7a826a..0000000 --- a/debian/patches/series +++ /dev/null @@ -1,3 +0,0 @@ -fix_examples_perl_location -#fix_berkeleydb3_temp_file_creation -BioPerl-1.006924-RT106756.patch -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bioperl.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
