This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository pbtestdata.
commit ec9de0764d184223dc1542a7b783f50ddade3bf4 Author: Afif Elghraoui <[email protected]> Date: Sat Jul 23 20:02:55 2016 -0700 Initial packaging --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 24 ++++++++++++++++++++++++ debian/copyright | 37 +++++++++++++++++++++++++++++++++++++ debian/manpages | 1 + debian/pbdata.1 | 14 ++++++++++++++ debian/rules | 11 +++++++++++ debian/source/format | 1 + debian/tests/control | 2 ++ debian/tests/rules | 20 ++++++++++++++++++++ debian/watch | 3 +++ 11 files changed, 119 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..ae380cc --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +pbtestdata (0.0.13-1) unstable; urgency=medium + + * Initial release (Closes: #832311) + + -- Afif Elghraoui <[email protected]> Sat, 23 Jul 2016 16:01:00 -0700 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..3745798 --- /dev/null +++ b/debian/control @@ -0,0 +1,24 @@ +Source: pbtestdata +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Afif Elghraoui <[email protected]> +Build-Depends: + debhelper (>=9), + dh-python, + python-all, + python-setuptools, +Standards-Version: 3.9.8 +Homepage: https://github.com/PacificBiosciences/PacBioTestData +Vcs-Git: https://anonscm.debian.org/git/debian-med/pbtestdata.git +Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pbtestdata.git + +Package: pbtestdata +Architecture: all +Depends: + ${misc:Depends}, + ${python:Depends}, + python-pkg-resources, +Description: small Pacific Biosciences datasets for testing + Utility and Python API for accessing representative Pacific Bioscience + sequencing data files for testing. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..28c0b1e --- /dev/null +++ b/debian/copyright @@ -0,0 +1,37 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: pbtestdata +Upstream-Contact: Pacific Biosciences <[email protected]> +Source: https://github.com/PacificBiosciences/PacBioTestData + +Files: * +Copyright: 2016 Nat Echols (for Pacific Biosciences) +License: BSD-3-Clause + +Files: debian/* +Copyright: 2016 Afif Elghraoui <[email protected]> +License: BSD-3-Clause + +License: BSD-3-Clause + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + 3. Neither the name of the University nor the names of its contributors + may be used to endorse or promote products derived from this software + without specific prior written permission. + . + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR + A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE HOLDERS OR + CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, + EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, + PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR + PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF + LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING + NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS + SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/debian/manpages b/debian/manpages new file mode 100644 index 0000000..d26d9d8 --- /dev/null +++ b/debian/manpages @@ -0,0 +1 @@ +debian/pbdata.1 diff --git a/debian/pbdata.1 b/debian/pbdata.1 new file mode 100644 index 0000000..7ba50f5 --- /dev/null +++ b/debian/pbdata.1 @@ -0,0 +1,14 @@ +.TH PBDATA 1 "July 2016" +.SH NAME +pbdata \- utility for accessing PacBio sequencing data files for testing +.SH SYNOPSIS +.B pbdata +.RI [ options ] " files" ... +.SH OPTIONS +For a complete description of options, see the help menu. +.TP +.B \-h, \-\-help +Show summary of options. +.TP +.B \-v, \-\-version +Show version of program. diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..70228ca --- /dev/null +++ b/debian/rules @@ -0,0 +1,11 @@ +#!/usr/bin/make -f + +#export DH_VERBOSE = 1 +export LC_ALL=C.UTF-8 + +%: + dh $@ --with python2 --buildsystem=pybuild --sourcedirectory=src/python + +override_dh_auto_clean: + dh_auto_clean + $(MAKE) clean diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..383a0a3 --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,2 @@ +Tests: rules +Depends: @, make diff --git a/debian/tests/rules b/debian/tests/rules new file mode 100755 index 0000000..8be5129 --- /dev/null +++ b/debian/tests/rules @@ -0,0 +1,20 @@ +#!/usr/bin/make -f + +.ONESHELL: + +MAKEFLAGS += --keep-going + +file=subreads-bam + +.PHONY: all +all: cli pylib + +.PHONY: cli +cli: + pbdata get $(file) + +.PHONY: pylib +pylib: SHELL=python +pylib: + import pbtestdata + pbtestdata.get_file("$(file)") diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..ac17f63 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=4 + +# Upstream does not tag releases -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbtestdata.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
