This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository permute.
commit 633063418152c1b9d10676a2bf35f18e4f9097d0 Merge: 5e217cd 6808f9c Author: Andreas Tille <[email protected]> Date: Mon Aug 8 09:15:48 2016 +0200 Merge tag 'upstream/0.9-0' Upstream version 0.9-0 DESCRIPTION | 21 +- MD5 | 92 +++---- NAMESPACE | 37 +-- R/Blocks.R | 6 - R/allPerms.R | 14 +- R/allStrata.R | 10 +- R/as.matrix.allPerms.R | 6 + R/blocks.R | 40 +++ R/check.R | 27 +- R/fixupCall.R | 10 +- R/getFoo-methods.R | 129 +-------- R/how.R | 6 +- R/nobs-methods.R | 3 + R/numPerms.R | 20 +- R/permCheck.R | 5 - R/permuplot.R | 198 -------------- R/permute-deprecated.R | 43 --- R/permute.R | 15 +- R/print.how.R | 2 +- R/print.permutationMatrix.R | 5 +- R/setFoo-methods.R | 82 +----- R/shuffle-utils.R | 5 +- R/shuffle.R | 146 ++++++---- R/shuffle2.R | 122 --------- R/shuffleSet.R | 216 +++++++++++---- R/shuffleSet2.R | 205 -------------- README.md | 33 +++ build/vignette.rds | Bin 230 -> 226 bytes data/jackal.rda | Bin 233 -> 233 bytes inst/ChangeLog | 58 +++- inst/NEWS | 97 +++++++ inst/NEWS.Rd | 86 ------ inst/doc/permutations.R | 10 +- inst/doc/permutations.Rnw | 12 +- inst/doc/permutations.pdf | Bin 315861 -> 312060 bytes inst/tests/test-allPerms.R | 127 --------- inst/tests/test-shuffleSet.R | 42 --- man/allPerms.Rd | 10 + man/check.Rd | 112 ++++---- man/how.Rd | 10 +- man/permCheck-deprecated.Rd | 66 ----- man/permControl-deprecated.Rd | 82 ------ man/permute-deprecated.Rd | 25 -- man/shuffleSet.Rd | 20 +- tests/Examples/permute-Ex.Rout.save | 370 +++++++++++--------------- tests/{test-all.R => testthat.R} | 6 +- tests/testthat/test-allPerms.R | 289 ++++++++++++++++++++ tests/testthat/test-as-methods.R | 18 ++ tests/testthat/test-blocks.R | 11 + {inst/tests => tests/testthat}/test-check.R | 15 +- tests/testthat/test-get-methods.R | 22 ++ tests/testthat/test-how.R | 14 + tests/testthat/test-nobs.R | 34 +++ tests/testthat/test-numPerms.R | 12 + tests/testthat/test-permute-fun.R | 35 +++ tests/testthat/test-set-methods.R | 171 ++++++++++++ tests/testthat/test-shuffle-utils.R | 64 +++++ {inst/tests => tests/testthat}/test-shuffle.R | 14 +- tests/testthat/test-shuffleSet.R | 85 ++++++ vignettes/Z.cls | 247 ----------------- vignettes/permutations.Rnw | 12 +- 61 files changed, 1711 insertions(+), 1963 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/permute.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
