This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-cran-vegan.
commit fc150fb25784862dc86f9aa3c7b5be39bb6805d2 Merge: 70344d5 d118e5b Author: Andreas Tille <[email protected]> Date: Mon Aug 8 09:05:59 2016 +0200 Merge tag 'upstream/2.4-0' Upstream version 2.4-0 DESCRIPTION | 17 +-- MD5 | 293 ++++++++++++++++++++++--------------------- NAMESPACE | 31 +++-- R/GowerDblcen.R | 48 +++++++ R/MDSrotate.R | 13 ++ R/RsquareAdj.R | 22 +--- R/adipart.default.R | 9 +- R/adipart.formula.R | 11 +- R/adonis2.R | 109 ++++++++++++++++ R/anova.cca.R | 2 +- R/anova.ccabyterm.R | 36 +++++- R/anova.ccalist.R | 2 +- R/anova.ccanull.R | 2 +- R/as.fisher.R | 4 +- R/as.mcmc.oecosimu.R | 40 +++++- R/as.ts.oecosimu.R | 5 +- R/betadisper.R | 19 ++- R/betadiver.R | 2 +- R/calibrate.cca.R | 7 ++ R/capscale.R | 64 +++++++--- R/contribdiv.R | 2 + R/dbrda.R | 252 +++++++++++++++++++++++++++++++++++++ R/decorana.R | 6 +- R/designdist.R | 13 +- R/deviance.rda.R | 2 +- R/eigenvals.R | 22 +++- R/eventstar.R | 6 +- R/extractAIC.cca.R | 6 +- R/fitted.capscale.R | 18 ++- R/fitted.dbrda.R | 54 ++++++++ R/goodness.cca.R | 118 ++++++++--------- R/hiersimu.default.R | 9 +- R/hiersimu.formula.R | 10 +- R/inertcomp.R | 60 +++++---- R/intersetcor.R | 3 +- R/lines.spantree.R | 8 +- R/make.commsim.R | 86 ++++++++++--- R/metaMDS.R | 16 ++- R/metaMDSdist.R | 5 +- R/metaMDSiter.R | 37 ++++-- R/monoMDS.R | 6 +- R/mso.R | 4 +- R/multipart.default.R | 7 +- R/multipart.formula.R | 10 +- R/nesteddisc.R | 28 ++--- R/nobs.R | 4 +- R/oecosimu.R | 17 ++- R/oldCapscale.R | 30 +++++ R/ordiGetData.R | 2 +- R/ordiR2step.R | 20 ++- R/ordiareatest.R | 8 +- R/ordiarrows.R | 18 ++- R/ordibar.R | 80 ++++++++++++ R/ordicluster.R | 19 ++- R/ordiellipse.R | 91 +++++++++++--- R/ordihull.R | 77 +++++++++--- R/ordisegments.R | 11 +- R/ordispider.R | 20 ++- R/pcnm.R | 14 +-- R/permustats.R | 86 +++++++++++-- R/permutest.cca.R | 43 +++++-- R/plot.betadisper.R | 87 ++++++++++--- R/plot.isomap.R | 6 + R/plot.spantree.R | 16 ++- R/plot.specaccum.R | 6 +- R/points.orditkplot.R | 7 +- R/postMDS.R | 7 +- R/predict.rda.R | 58 ++++++--- R/print.capscale.R | 9 -- R/print.cca.R | 47 ++++--- R/print.simmat.R | 10 +- R/print.varpart.R | 6 +- R/print.varpart234.R | 10 +- R/print.wcmdscale.R | 2 + R/rarecurve.R | 2 + R/renyi.R | 12 +- R/scores.betadisper.R | 4 +- R/scores.rda.R | 16 ++- R/simpleRDA2.R | 19 ++- R/simulate.nullmodel.R | 18 +-- R/simulate.rda.R | 11 ++ R/smbind.R | 170 +++++++++++++++++++++++++ R/spenvcor.R | 4 +- R/stressplot.wcmdscale.R | 113 +++++++++++++++-- R/summary.ordiellipse.R | 4 +- R/summary.ordihull.R | 2 +- R/text.orditkplot.R | 11 +- R/update.nullmodel.R | 1 + R/varpart.R | 58 +++++++-- R/varpart2.R | 15 ++- R/varpart3.R | 15 ++- R/varpart4.R | 15 ++- R/vegan-defunct.R | 74 ++++++++++- R/vegan-deprecated.R | 188 +-------------------------- R/wascores.R | 6 +- R/wcmdscale.R | 22 +++- R/weights.rda.R | 4 +- build/partial.rdb | Bin 0 -> 21794 bytes data/BCI.env.rda | Bin 337 -> 705 bytes data/BCI.rda | Bin 8503 -> 8759 bytes inst/NEWS.Rd | 216 +++++++++++++++++++++++++++++++ inst/doc/decision-vegan.R | 30 ++--- inst/doc/decision-vegan.Rnw | 141 +++++++++------------ inst/doc/decision-vegan.pdf | Bin 342272 -> 340954 bytes inst/doc/diversity-vegan.pdf | Bin 365179 -> 365970 bytes inst/doc/intro-vegan.R | 42 ++++--- inst/doc/intro-vegan.Rnw | 16 +-- inst/doc/intro-vegan.pdf | Bin 234604 -> 238817 bytes inst/doc/partitioning.pdf | Bin 137301 -> 137524 bytes man/BCI.Rd | 76 ++++++++--- man/MDSrotate.Rd | 28 ++++- man/RsquareAdj.Rd | 17 ++- man/adipart.Rd | 32 +++-- man/adonis.Rd | 198 +++++++++++++---------------- man/anosim.Rd | 4 +- man/betadisper.Rd | 49 +++++++- man/betadiver.Rd | 21 ++-- man/capscale.Rd | 204 +++++++++++++++--------------- man/cca.object.Rd | 65 +++++++++- man/commsim.Rd | 157 +++++++++++++---------- man/decorana.Rd | 14 +-- man/designdist.Rd | 38 ++++-- man/envfit.Rd | 2 +- man/isomap.Rd | 12 +- man/linestack.Rd | 2 +- man/metaMDS.Rd | 71 ++++++++--- man/monoMDS.Rd | 37 ++++++ man/mrpp.Rd | 4 +- man/multipart.Rd | 101 +++++++++------ man/nullmodel.Rd | 126 ++++++++++++++++--- man/ordiarrows.Rd | 18 ++- man/ordihull.Rd | 118 +++++++++++------ man/ordipointlabel.Rd | 8 +- man/ordistep.Rd | 39 +++--- man/ordisurf.Rd | 2 +- man/orditkplot.Rd | 20 +-- man/ordixyplot.Rd | 2 +- man/permustats.Rd | 63 +++++++--- man/permutest.betadisper.Rd | 4 +- man/plot.cca.Rd | 2 +- man/predict.cca.Rd | 3 +- man/spantree.Rd | 15 ++- man/specaccum.Rd | 6 +- man/stressplot.wcmdscale.Rd | 14 ++- man/varpart.Rd | 144 ++++++++++++++------- man/vegan-defunct.Rd | 38 ++++-- man/vegan-deprecated.Rd | 72 +---------- man/vegan-internal.Rd | 18 +++ man/wcmdscale.Rd | 36 ++++-- src/nestedness.c | 138 ++++++++++++++++---- vignettes/decision-vegan.Rnw | 141 +++++++++------------ vignettes/intro-vegan.Rnw | 16 +-- 152 files changed, 3965 insertions(+), 1774 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-vegan.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
