This is an automated email from the git hooks/post-receive script. cbk-guest pushed a commit to branch master in repository cd-hit.
commit 91306cf3b408ee7de1c0c0cf939efd7db46cd25c Author: cbk-guest <[email protected]> Date: Thu Aug 11 08:10:39 2016 +0300 Autopkgtest added with error --- debian/cd-hit.examples | 1 + debian/changelog | 8 +++++++- debian/tests.cd-hit/example.fa | 42 ++++++++++++++++++++++++++++++++++++++++++ debian/tests/control | 3 +++ debian/tests/run-unit-test | 23 +++++++++++++++++++++++ 5 files changed, 76 insertions(+), 1 deletion(-) diff --git a/debian/cd-hit.examples b/debian/cd-hit.examples new file mode 100644 index 0000000..71caadb --- /dev/null +++ b/debian/cd-hit.examples @@ -0,0 +1 @@ +debian/tests.cd-hit/* diff --git a/debian/changelog b/debian/changelog index 5f10e9d..37ddd3b 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,9 +1,15 @@ cd-hit (4.6.6-1) UNRELEASED; urgency=medium + * Team upload + + [ Andreas Tille ] * New upstream version * Moved from SVN to Git - -- Andreas Tille <[email protected]> Wed, 03 Aug 2016 22:13:30 +0200 + [ Canberk Koç ] + * Autopkgtest added + + -- Canberk Koç <[email protected]> Thu, 11 Aug 2016 08:09:28 +0300 cd-hit (4.6.5-2) unstable; urgency=medium diff --git a/debian/tests.cd-hit/example.fa b/debian/tests.cd-hit/example.fa new file mode 100644 index 0000000..ff8aa63 --- /dev/null +++ b/debian/tests.cd-hit/example.fa @@ -0,0 +1,42 @@ +>CALM_HUMAN +MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD +GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLT +DEEVDEMIREADIDGDGQVNYEEFVQMMTAK +>AF01595 Human telomerase reverse transcriptase (hTRT) mRNA +MPRAPRCRAVRSLLRSHYREVLPLATFVRRLGPQGWRLVQRGDPAAFRALVAQCLVCVP +WDARPPPAAPSFRQVSCLKELVARVLQRLCERGAKNVLAFGFALLDGARGGPPEAFTTS +VRSYLPNTVTDALRGSGAWGLLLRRVGDDVLVHLLARCALFVLVAPSCAYQVCGPPLYQ +LGAATQARPPPHASGPRRRLGCERAWNHSVREAGVPLGLPAPGARRRGGSASRSLPLPK +RPRRGAAPEPERTPVGQGSWAHPGRTRGPSDRGFCVVSPARPAEEATSLEGALSGTRHS +HPSVGRQHHAGPPSTSRPPRPWDTPCPPVYAETKHFLYSSGDKEQLRPSFLLSSLRPSL +TGARRLVETIFLGSRPWMPGTPRRLPRLPQRYWQMRPLFLELLGNHAQCPYGVLLKTHC +PLRAAVTPAAGVCAREKPQGSVAAPEEEDTDPRRLVQLLRQHSSPWQVYGFVRACLRRL +VPPGLWGSRHNERRFLRNTKKFISLGKHAKLSLQELTWKMSVRDCAWLRRSPGVGCVPA +AEHRLREEILAKFLHWLMSVYVVELLRSFFYVTETTFQKNRLFFYRKSVWSKLQSIGIR +QHLKRVQLRELSEAEVRQHREARPALLTSRLRFIPKPDGLRPIVNMDYVVGARTFRREK +RAERLTSRVKALFSVLNYERARRPGLLGASVLGLDDIHRAWRTFVLRVRAQDPPPELYF +VKVDVTGAYDTIPQDRLTEVIASIIKPQNTYCVRRYAVVQKAAHGHVRKAFKSHVSTLT +DLQPYMRQFVAHLQETSPLRDAVVIEQSSSLNEASSGLFDVFLRFMCHHAVRIRGKSYV +QCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLLVTPHLTHAKTFLR +TLVRGVPEYGCVVNLRKTVVNFPVEDEALGGTAFVQMPAHGLFPWCGLLLDTRTLEVQS +DYSSYARTSIRASLTFNRGFKAGRNMRRKLFGVLRLKCHSLFLDLQVNSLQTVCTNIYK +ILLLQAYRFHACVLQLPFHQQVWKNPTFFLRVISDTASLCYSILKAKNAGMSLGAKGAA +GPLPSEAVQWLCHQAFLLKLTRHRVTYVPLLGSLRTAQTQLSRKLPGTTLTALEAAANP +ALPSDFKTILD +>P53_HUMAN +MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGP +DEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAK +SVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE +RCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNS +SCMGGMNRRPILTIITLEDSSGNLLGRNSFEVHVCACPGRDRRTEEENLRKKGEPHHELP +PGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG +GSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD +>TUBE_DROME +MAYGWNGCGMGVQVNGSNGAIGLSSKYSRNTELRRVEDNDIYRLAKILDENSCWRKLMS +IIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDEAANRLPPDQSKSQMMIDEWK +TSGKLNERPTVGVLLQLLVQAELFSAADFVALDFLNESTPARPVDGPGALISLELLEEE +MEVDNEGLSLKYQSSTATLGADAQGSVGLNLDNFEKDIVRRDKSVPQPSGNTPPIAPPR +RQQRSTTNSNFATLTGTGTTSTTIPNVPNLTILNPSEQIQEPVLQPRPMNIPDLSILIS +NSGDLRATVSDNPSNRTSSTDPPNIPRITLLIDNSGDVNSRPNHAPAKASTATTPTASS +NNLPMISALNISKGSKETLRPESRSSSSSLSKDDDDDNDGEEDGEEEYPDAFLPNLSNS +EQQSSNNDSSLTTVTGTSGDNSFELTNDSSSTSNDDYACNIPDLSELQQ diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..d2aa55a --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test new file mode 100644 index 0000000..3d51d40 --- /dev/null +++ b/debian/tests/run-unit-test @@ -0,0 +1,23 @@ +#!/bin/bash +set -e + +pkg="cd-hit" + +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP + +cd $AUTOPKGTEST_TMP +find . -name "*.gz" -exec gunzip \{\} \; + +echo "==== CD_HIT-PARA ====" +cd-hit-para -i example.fa -o db90 -c 0.9 -n 5 -M 16000 –d 0 -T 0 +echo "==== CD_HIT-2D-PARA ====" +cd-hit-2d-para -i example.fa -i2 example.fa -o db2novel -c 0.9 -n 5 -d 0 -M 16000 -T 0 +echo "==== cd-hit-div ====" +cd-hit-div -i example.fa -o output -div n + +echo "PASS" -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/cd-hit.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
