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malex-guest pushed a change to branch master
in repository gmap.
from 78d7476 Update changelog, upload to unstable
new 5ad0536 New upstream version 2016-09-14
new 6c1307f Merge tag 'upstream/2016-09-14'
new 6415ea0 Update changelog, upload to unstable
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
ChangeLog | 90 +++++
VERSION | 2 +-
configure | 24 +-
debian/changelog | 6 +
src/bitpack64-incr.c | 6 +-
src/dynprog_genome.c | 225 ++++++-------
src/gmap.c | 34 +-
src/gsnap.c | 32 +-
src/indel.c | 8 +-
src/indexdb.c | 14 +-
src/indexdb.h | 4 +-
src/sarray-read.c | 266 +++++++++------
src/splice.c | 805 +++++++++++++++++++++++++++++++++++++++++++-
src/splice.h | 12 +-
src/stage1hr.c | 932 +++++++++++++++++++++++++++------------------------
src/stage3.c | 304 ++++++++++++++++-
src/stage3hr.c | 408 +++++++++++++++-------
src/stage3hr.h | 8 +-
src/substring.c | 925 ++++++++++----------------------------------------
src/substring.h | 14 +-
src/uniqscan.c | 30 +-
21 files changed, 2514 insertions(+), 1635 deletions(-)
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