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malex-guest pushed a commit to branch master
in repository gmap.
commit 6c1307f32ffb266161fa8954f56d65d5fa6cbf3d
Merge: 78d7476 5ad0536
Author: Alexandre Mestiashvili <a...@biotec.tu-dresden.de>
Date: Mon Sep 19 16:06:46 2016 +0200
Merge tag 'upstream/2016-09-14'
Upstream version 2016-09-14
ChangeLog | 90 +++++
VERSION | 2 +-
configure | 24 +-
src/bitpack64-incr.c | 6 +-
src/dynprog_genome.c | 225 ++++++-------
src/gmap.c | 34 +-
src/gsnap.c | 32 +-
src/indel.c | 8 +-
src/indexdb.c | 14 +-
src/indexdb.h | 4 +-
src/sarray-read.c | 266 +++++++++------
src/splice.c | 805 +++++++++++++++++++++++++++++++++++++++++++-
src/splice.h | 12 +-
src/stage1hr.c | 932 +++++++++++++++++++++++++++------------------------
src/stage3.c | 304 ++++++++++++++++-
src/stage3hr.c | 408 +++++++++++++++-------
src/stage3hr.h | 8 +-
src/substring.c | 925 ++++++++++----------------------------------------
src/substring.h | 14 +-
src/uniqscan.c | 30 +-
20 files changed, 2508 insertions(+), 1635 deletions(-)
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