This is an automated email from the git hooks/post-receive script.
afif pushed a change to branch debian/jessie-backports
in repository mhap.
from 34b0e64 releasing package mhap version 2.1+dfsg-1~bpo8+1
adds 564212a Imported Upstream version 2.1+dfsg
adds 6f4bf90 Imported Upstream version 2.1.1+dfsg
adds 0167fb2 Merge tag 'upstream/2.1.1+dfsg'
adds 46da486 Remove duplicate word from package description
adds ca8a777 releasing package mhap version 2.1.1+dfsg-1
new 1b8dec8 Merge tag 'debian/2.1.1+dfsg-1' into
debian/jessie-backports
new 78207da releasing package mhap version 2.1.1+dfsg-1~bpo8+1
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
README.md | 4 +-
debian/changelog | 13 +++++++
debian/control | 2 +-
docs/source/installation.rst | 18 ++++-----
docs/source/quickstart.rst | 7 +++-
docs/source/utilities.rst | 6 +--
pom.xml | 2 +-
.../mhap/impl/MinHashBitSequenceSubSketches.java | 7 ++--
.../edu/umd/marbl/mhap/impl/MinHashSearch.java | 7 +---
.../edu/umd/marbl/mhap/impl/SequenceSketch.java | 17 ++++----
.../marbl/mhap/impl/SequenceSketchStreamer.java | 45 ++++++++++++++++------
.../java/edu/umd/marbl/mhap/main/AlignmentTry.java | 3 +-
.../java/edu/umd/marbl/mhap/main/EstimateROC.java | 2 +-
.../edu/umd/marbl/mhap/main/KmerStatSimulator.java | 13 ++++---
.../java/edu/umd/marbl/mhap/main/MhapMain.java | 5 +--
...edNGramHashes.java => BottomOverlapSketch.java} | 16 ++++----
.../sketch/{BottomHash.java => BottomSketch.java} | 8 ++--
.../edu/umd/marbl/mhap/sketch/FrequencyCounts.java | 34 +++++++++-------
.../umd/marbl/mhap/sketch/MinHashBitSketch.java | 2 +-
.../edu/umd/marbl/mhap/sketch/MinHashSketch.java | 41 +++++++++++---------
.../mhap/sketch/ZeroNGramsFoundException.java | 43 +++++++++++++++++++++
21 files changed, 191 insertions(+), 104 deletions(-)
rename src/main/java/edu/umd/marbl/mhap/sketch/{OrderedNGramHashes.java =>
BottomOverlapSketch.java} (95%)
rename src/main/java/edu/umd/marbl/mhap/sketch/{BottomHash.java =>
BottomSketch.java} (85%)
create mode 100644
src/main/java/edu/umd/marbl/mhap/sketch/ZeroNGramsFoundException.java
--
Alioth's /usr/local/bin/git-commit-notice on
/srv/git.debian.org/git/debian-med/mhap.git
_______________________________________________
debian-med-commit mailing list
debian-med-commit@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
