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commit eca4c2ef5d70166429f98f24430b3a012d9d6148
Author: Afif Elghraoui <a...@debian.org>
Date: Mon Oct 17 01:36:32 2016 -0700
Update manpage
The changes here are based on the README updates in
https://github.com/fritzsedlazeck/Sniffles/commit/ff3b4a6691bfc7ab26859d620398806d9ae43844
which was not part of the latest release.
---
debian/sniffles.1.md | 8 ++------
1 file changed, 2 insertions(+), 6 deletions(-)
diff --git a/debian/sniffles.1.md b/debian/sniffles.1.md
index 484a77c..87bb70d 100644
--- a/debian/sniffles.1.md
+++ b/debian/sniffles.1.md
@@ -1,4 +1,4 @@
-% SNIFFLES(1) 0.0.1
+% SNIFFLES(1) 1.0.0
% Fritz Sedlazeck <fritz.sedlaz...@gmail.com>
%
@@ -10,7 +10,7 @@ sniffles - structural variation caller for third-generation
sequencing data
**sniffles** -m *string* [-s *int*] [--max_num_splits *int*] [-q *int*]
[-l *int*] [-v *string*] [--bede *string*] [-c *int*] [-t
- *int*] [-d *int*] [-n *int*] [--use_MD_Cigar] [--]
+ *int*] [-d *int*] [-n *int*] [--]
[--version] [-h]
**sniffles** **-m** *reads.bam* **-v** *calls.vcf*
@@ -55,10 +55,6 @@ Sniffles is a structural variation caller using third
generation sequencing (Pac
-n *int*, --num_reads_report *int*
: Report up to N reads that support the SV. Default: 0
- --use_MD_Cigar
-: Enables Sniffles to use the alignment information to screen for
- suspicious regions.
-
--, --ignore_rest
: Ignores the rest of the labeled arguments following this flag.
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