This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository pbbam.
commit f3307ceb23b1861f8e0950ab327ca8c4e095c4ea Author: Afif Elghraoui <[email protected]> Date: Sun Oct 30 14:31:22 2016 -0700 Update patches --- debian/patches/dont-try-building-gtest.patch | 2 +- debian/patches/ssl-md5.patch | 22 +++++++++++----------- debian/patches/use-PATH-for-test-programs.patch | 2 +- 3 files changed, 13 insertions(+), 13 deletions(-) diff --git a/debian/patches/dont-try-building-gtest.patch b/debian/patches/dont-try-building-gtest.patch index df4e13f..d264b33 100644 --- a/debian/patches/dont-try-building-gtest.patch +++ b/debian/patches/dont-try-building-gtest.patch @@ -7,7 +7,7 @@ Forwarded: not-needed Last-Update: 2015-09-07 --- pbbam.orig/CMakeLists.txt +++ pbbam/CMakeLists.txt -@@ -170,16 +170,6 @@ +@@ -174,16 +174,6 @@ if(PacBioBAM_build_tests) diff --git a/debian/patches/ssl-md5.patch b/debian/patches/ssl-md5.patch index f5153a9..9c4ce98 100644 --- a/debian/patches/ssl-md5.patch +++ b/debian/patches/ssl-md5.patch @@ -8,17 +8,17 @@ Description: Use libssl for md5.h rather than cram . 1. https://anonscm.debian.org/cgit/debian-med/htslib.git/tree/cram/md5.h?id=12251926b9d0265738d701bb0add6fe9d070ccb3 2. http://sourceforge.net/p/samtools/mailman/message/33488076/ -Author: Afif Elghraoui <[email protected]> +Author: Afif Elghraoui <[email protected]> Forwarded: no -Last-Update: 2015-09-07 ---- pbbam.orig/src/ReadGroupInfo.cpp -+++ pbbam/src/ReadGroupInfo.cpp -@@ -42,7 +42,7 @@ - #include "pbbam/ReadGroupInfo.h" - #include "ChemistryTable.h" - #include "SequenceUtils.h" +Last-Update: 2015-10-30 +--- pbbam.orig/src/MD5.cpp ++++ pbbam/src/MD5.cpp +@@ -40,7 +40,7 @@ + // Author: Brett Bowman + + #include "pbbam/MD5.h" -#include <cram/md5.h> +#include <openssl/md5.h> - #include <iomanip> - #include <set> - #include <sstream> + + namespace PacBio { + namespace BAM { diff --git a/debian/patches/use-PATH-for-test-programs.patch b/debian/patches/use-PATH-for-test-programs.patch index 1b6c1b7..0d852d5 100644 --- a/debian/patches/use-PATH-for-test-programs.patch +++ b/debian/patches/use-PATH-for-test-programs.patch @@ -94,7 +94,7 @@ the build tree. + $ BAM2SAM="bam2sam" && export BAM2SAM $ DATADIR="$TESTDIR/../../data" && export DATADIR - $ INPUT_FOFN="$DATADIR/dataset/merge.fofn" && export INPUT_FOFN + $ INPUT_FOFN="$DATADIR/merge.fofn" && export INPUT_FOFN --- pbbam.orig/tests/src/cram/pbmerge_mixed_ordering.t +++ pbbam/tests/src/cram/pbmerge_mixed_ordering.t @@ -1,8 +1,8 @@ -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbbam.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
