This is an automated email from the git hooks/post-receive script. bob.dybian-guest pushed a commit to branch master in repository eagle.
commit 9d1f5e632b89ea69b348327bc7a30973f82acbbc Author: Dylan Aïssi <[email protected]> Date: Sun Oct 30 23:30:59 2016 +0100 Remove the test which creates a false positive in the autopkgtest by emitting some warnings. (Closes: #842356) --- debian/bio-eagle-examples.install | 2 +- debian/changelog | 7 +++++++ debian/rules | 5 ----- debian/tests/run-sample-analysis | 15 ++++++--------- 4 files changed, 14 insertions(+), 15 deletions(-) diff --git a/debian/bio-eagle-examples.install b/debian/bio-eagle-examples.install index 784167d..4e0822b 100644 --- a/debian/bio-eagle-examples.install +++ b/debian/bio-eagle-examples.install @@ -1,2 +1,2 @@ -example/examples.tar.xz /usr/share/doc/bio-eagle/examples/ +example/* /usr/share/doc/bio-eagle/examples/ tables /usr/share/doc/bio-eagle/examples/ diff --git a/debian/changelog b/debian/changelog index 5c786bb..dce74ca 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,10 @@ +bio-eagle (2.3-3) unstable; urgency=medium + + * Remove the test which creates a false positive in the autopkgtest + by emitting some warnings. (Closes: #842356) + + -- Dylan Aïssi <[email protected]> Sun, 30 Oct 2016 23:26:33 +0100 + bio-eagle (2.3-2) unstable; urgency=medium * Add a comment in the description about the renaming. diff --git a/debian/rules b/debian/rules index 65e44fc..9ed8893 100755 --- a/debian/rules +++ b/debian/rules @@ -5,11 +5,6 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all %: dh $@ --sourcedirectory=src -override_dh_install: - cd $(CURDIR)/example/ && \ - tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner - dh_install - override_dh_installchangelogs: dh_installchangelogs debian/upstream.changelog diff --git a/debian/tests/run-sample-analysis b/debian/tests/run-sample-analysis index 96b6419..af8e86f 100755 --- a/debian/tests/run-sample-analysis +++ b/debian/tests/run-sample-analysis @@ -2,7 +2,7 @@ # http://dep.debian.net/deps/dep8/ # Autopkgtest: Test if (bio-)eagle run analysis correctly # Author: Dylan Aïssi <[email protected]> -# Last-Update: 2016-09-17 +# Last-Update: 2016-10-30 pkg=bio-eagle if [ "$ADTTMP" = "" ] ; then @@ -11,7 +11,11 @@ fi cd $ADTTMP cp -a /usr/share/doc/${pkg}/examples/* $ADTTMP -tar Jxvf $ADTTMP/examples.tar.xz +gunzip EUR_test.bed.gz +gunzip EUR_test.bim.gz +gunzip EUR_test.fam.gz +gunzip phased.sample.gz +gunzip ref.bcf.gz # From upstream run_example.sh bio-eagle \ @@ -37,12 +41,5 @@ bio-eagle \ --numThreads=4 \ --v1fast -# From upstream run_example_ref.sh -bio-eagle \ - --vcfRef=ref.bcf \ - --vcfTarget=target.vcf.gz \ - --geneticMapFile=tables/genetic_map_hg19_example.txt.gz \ - --outPrefix=target.phased - rm -rf $ADTTMP/* -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/eagle.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
