This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch topic/more-utils in repository blasr.
commit c476399e34ba9925861b53277e424eadd8be8d58 Author: Afif Elghraoui <[email protected]> Date: Tue Oct 25 00:49:01 2016 -0700 Build with pbbam This enhances the functionality of blasr (enabling the --sam option). --- debian/TODO | 2 -- debian/control | 2 ++ debian/rules | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/debian/TODO b/debian/TODO index 7c4d906..04d3e21 100644 --- a/debian/TODO +++ b/debian/TODO @@ -3,5 +3,3 @@ * Update manpages * build bax2bam and bam2bax - -* Look into building with pbbam diff --git a/debian/control b/debian/control index 8508e8f..4a848b7 100644 --- a/debian/control +++ b/debian/control @@ -11,6 +11,7 @@ Build-Depends: libblasr-dev, libpbdata-dev, libpbihdf-dev, + libpbbam-dev, Standards-Version: 3.9.8 Homepage: https://github.com/PacificBiosciences/blasr Vcs-Git: https://anonscm.debian.org/git/debian-med/blasr.git @@ -24,6 +25,7 @@ Depends: libblasr, libpbdata, libpbihdf, + libpbbam, Description: mapping single-molecule sequencing reads Basic local alignment with successive refinement (BLASR) is a method for mapping single-molecule sequencing reads against a reference genome. diff --git a/debian/rules b/debian/rules index e3961ee..eb33f93 100755 --- a/debian/rules +++ b/debian/rules @@ -15,7 +15,7 @@ export LIBPBIHDF_INC=$(PBSEQ_BASE)/hdf dh $@ --parallel override_dh_auto_configure: - ./configure.py --no-pbbam --shared + ./configure.py --shared # Tests require data not available in the source distribution override_dh_auto_test: ; -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/blasr.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
