This is an automated email from the git hooks/post-receive script. daube-guest pushed a commit to branch master in repository python-skbio.
commit 1178635148834235ae175c4e03634cc9fc2f3fb1 Merge: da78527 1ee78f3 Author: Kevin Murray <[email protected]> Date: Tue Nov 15 18:56:30 2016 +1100 Merge tag 'upstream/0.5.1' Upstream version 0.5.1 CHANGELOG.md | 39 +- checklist.py | 26 +- ci/matplotlibrc | 1 + doc/source/index.rst | 1 + doc/source/metadata.rst | 1 + licenses/bx_python.txt | 20 + setup.py | 15 +- skbio/__init__.py | 5 +- skbio/alignment/_pairwise.py | 2 +- skbio/diversity/__init__.py | 5 +- skbio/diversity/_block.py | 319 + skbio/diversity/_driver.py | 2 +- skbio/diversity/tests/test_block.py | 207 + skbio/io/__init__.py | 1 + skbio/io/format/_blast.py | 29 +- skbio/io/format/_sequence_feature_vocabulary.py | 351 + skbio/io/format/genbank.py | 557 +- skbio/io/format/tests/data/genbank_multi_records | 8 +- skbio/io/format/tests/data/genbank_single_record | 6 +- skbio/io/format/tests/test_fasta.py | 5 +- skbio/io/format/tests/test_genbank.py | 305 +- .../tests/test_sequence_feature_vocabulary.py | 102 + skbio/metadata/__init__.py | 14 + skbio/metadata/_intersection.c | 10555 +++++++++++++++++++ skbio/metadata/_intersection.pyx | 529 + skbio/metadata/_interval.py | 978 ++ skbio/metadata/_mixin.py | 135 +- skbio/metadata/_repr.py | 21 +- skbio/metadata/_testing.py | 315 + skbio/metadata/tests/test_intersection.py | 241 + skbio/metadata/tests/test_interval.py | 718 ++ skbio/metadata/tests/test_mixin.py | 42 +- skbio/sequence/_dna.py | 14 +- skbio/sequence/_grammared_sequence.py | 9 +- skbio/sequence/_nucleotide_mixin.py | 17 +- skbio/sequence/_protein.py | 4 + skbio/sequence/_rna.py | 9 + skbio/sequence/_sequence.py | 237 +- skbio/sequence/tests/test_dna.py | 10 +- skbio/sequence/tests/test_grammared_sequence.py | 9 +- skbio/sequence/tests/test_nucleotide_sequences.py | 35 +- skbio/sequence/tests/test_rna.py | 10 +- skbio/sequence/tests/test_sequence.py | 325 +- skbio/stats/composition.py | 47 +- skbio/stats/distance/_base.py | 132 +- skbio/stats/distance/tests/test_base.py | 203 +- skbio/stats/power.py | 6 +- skbio/stats/tests/test_composition.py | 72 + skbio/stats/tests/test_power.py | 15 +- skbio/tree/_tree.py | 44 +- skbio/tree/tests/test_tree.py | 26 + skbio/util/__init__.py | 9 +- skbio/util/_decorator.py | 23 +- skbio/util/_misc.py | 196 +- skbio/util/tests/test_misc.py | 82 +- 55 files changed, 15899 insertions(+), 1190 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-skbio.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
