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commit 27ecdf89785f53c5758890a9b05e81c6986c494f Author: Sascha Steinbiss <[email protected]> Date: Sat Dec 17 11:49:28 2016 +0000 add autopkgtest --- debian/changelog | 2 + debian/tests/actin.faa | 24 ++ debian/tests/actin_2.faa | 4 + debian/tests/actin_pseudo.fna | 487 ++++++++++++++++++++++++++++++++++++ debian/tests/actin_pseudo_small.fna | 182 ++++++++++++++ debian/tests/control | 3 + debian/tests/test_example | 18 ++ 7 files changed, 720 insertions(+) diff --git a/debian/changelog b/debian/changelog index ca4777a..ce634b9 100644 --- a/debian/changelog +++ b/debian/changelog @@ -7,6 +7,8 @@ dialign-t (1.0.2-9) UNRELEASED; urgency=medium [ Sascha Steinbiss ] * Enable full hardening. * Use versioned license link. + * Add autopkgtest. + Closes: #848330 -- Andreas Tille <[email protected]> Thu, 03 Nov 2016 19:31:49 +0100 diff --git a/debian/tests/actin.faa b/debian/tests/actin.faa new file mode 100644 index 0000000..51ce150 --- /dev/null +++ b/debian/tests/actin.faa @@ -0,0 +1,24 @@ +>9595:0030d1 {"pub_gene_id":"ACTG1", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"Similarity:Belongs to the actin family."} +MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9595:0003fb {"pub_gene_id":"101131572", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"Similarity:Belongs to the actin family."} +LTMDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9597:003d50 {"pub_gene_id":"100990579", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"actin, cytoplasmic 1"} +MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9597:00363c {"pub_gene_id":"100987915", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"actin, beta"} +MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9597:0035ab {"pub_gene_id":"100987691", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"actin, cytoplasmic 1-like"} +MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9597:0008a9 {"pub_gene_id":"100970542", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"actin gamma 1"} +MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9598:00333e {"pub_gene_id":"ACTB", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"Similarity:Belongs to the actin family."} +MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQAHSRCISALQIMFETFNTPAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9601:003fec {"pub_gene_id":"ACTB", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"Beta-actin"} +MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9601:002032 {"pub_gene_id":"ACTG1", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"Similarity:Belongs to the actin family."} +MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9606:003ad3 {"pub_gene_id":"ACTG1", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"Gamma-actin"} +MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9606:00051e {"pub_gene_id":"ACTB;PS1TP5BP1", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"Beta-actin"} +MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>61853:0030ae {"pub_gene_id":"ACTG1", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"Similarity:Belongs to the actin family."} +MVAMEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF diff --git a/debian/tests/actin_2.faa b/debian/tests/actin_2.faa new file mode 100644 index 0000000..e5e2f9b --- /dev/null +++ b/debian/tests/actin_2.faa @@ -0,0 +1,4 @@ +>9595:0030d1 {"pub_gene_id":"ACTG1", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"Similarity:Belongs to the actin family."} +MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF +>9595:0003fb {"pub_gene_id":"101131572", "pub_og_id":"EOG090607L3", "og_name":"Similarity:Belongs to the actin family.","level":314295, "description":"Similarity:Belongs to the actin family."} +LTMDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF diff --git a/debian/tests/actin_pseudo.fna b/debian/tests/actin_pseudo.fna new file mode 100644 index 0000000..6b4a0b0 --- /dev/null +++ b/debian/tests/actin_pseudo.fna @@ -0,0 +1,487 @@ +>NG_026958.2 Homo sapiens actin, beta pseudogene 12 (ACTBP12) on chromosome 1 +AAAGTTAGCCAAACTTCCGGATCAGGTCCAGAATGGGGACAAGGGTACAGCTCACAGAAAGAAGATGGTA +CAAAGAACAGCTACAGCTGATGACAAAAAGCTGGAGAAGAGCTACAAGCTGCCCGACGGCCAGGTCATCA +CCATCGGCAACGAACGGTTCCGGTGTCCGGAGGTGCTGTTCCAGTCTTCCTTCCTGGGCATGGAATCCTG +TGGCACCCACAAGACCACCTTCAACTGCATCATGAAGTGTGATGTGGACATCTTCAAAGACCTGTACGCC +AACACAGTGCTGTCCAGCGGCACCACCATGTACCCAGACATCACCAACAGGATGCAGAAGGCAATCACTG +CCCTGGCACCTAGCACCATGAAGATCAAGATCATTGCACCCCGAGAGCGAAAGTACTCGGTGTGGATCGG +CGGCTCCATCCTGACCTCACTGTCCACCTTCCAGCAGATGTGCACTAGCAAGCAGGAGTATGACAAGTTG +GGCCCCTCCACTGTTCACCACAAATGCTTCTAAATAGACTGTGAGCAGATGCATAGCTTTTGCTGCATGG +GTTAATTCAGAAGTATAAATTTGTCCCTGGCAAATGCATACATCTCATGCTAGCCTCACGAATCTGGAAT +AAGC + +>NG_024215.2 Homo sapiens actin beta pseudogene (LOC100418883) on chromosome 19 +AGCCAGGATGGTCTCGATCTCCTCACCTAGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACA +GGCATGAGCCTCTGTGCTCAGCCTGGCACGACACCTTCTACAATGAGCTGCATGTTTCTCCCAAGGAGCA +CCCGGTGCTGCTGACCGAGGCCCCCTTGAACCCCAAGGCCAGCCATGAGAAGATGACCCAGATCATGTCT +GAGACCTTCAACTCCCCATCCATGTATATAGCCATCCAGGCTCTGCTGTCCCTGCACGTGGCCTCCAGCT +TCTCCCTGAAGAAGAGATTCCAGCTGCCTGACAGCCAGGTCATCACCATCAGCAACGAGCGGTCCCCGCT +GTCCCATGGCACTTTTCCAGCCTTCCTTCCTGGACATGGAATCCTGTGGCATCCATGAAACTACCCTCAA +CTCCATCATGAAATGTGACATTGACATCTGCAAAGACCTGGATGCCAACCCAGTGCTGTCCAGTGACACC +ACCATGTACGCTGGTATTGCTGACAGGATGGAGGAGGAGATCACCACCATGGCTCCCAGCATGAAGAAGA +TCAACATCATTGCTCCTCCTGAGCACAAATATTCTGTATGGATCAGTGGCTCCATCTTGGTCTCGCTGTC +CCCCTTCCAGCAGATGTGGATCAGCAAGCAGGAATACGAGGAGTCCGGCCTCAGTATTGTCCACCCTACC +ACAAATACTTCTAGGCGGACGGTGACTTACATTATAACCTTTCTTGACAAAAACCTAATTTATGCAGAAA +ATAAGATTGGTTTTTTTTTTTTTTTTTTTTGGCTTAAGATTTAAAACCTGGAATGGTGAAGGTGACAGCA +GTTAGTTGGAGCGAAGAATCCCAAACGTTCTACAATG + +>NG_008793.3 Homo sapiens actin, beta pseudogene 6 (ACTBP6) on chromosome 8 +TAAATAAGCTAAATGCTGTTCTGGTGTCACCTAACAAAGCTTAAAACAAGACTAAAAAATTCAAACTGTT +GTCTGGCATTGAATCACAAATCAATAGCAGACCACCAAAACCTCATCCACCCAGGAAGCACAGACCCTTG +CCCTCACTGCTTTGCCACTGGTTCACATCTGCCCTGAGCTCACCATGGATGATGATACCTCTGCACTTGT +TGGCAACTGCTCTGGTATGTGCAAGGCCAGAATCCTTGTCAAAGATGCCCCCAGGCCTTCTTCCTTTCCA +TAGTGGGATGCCCATGGGACCAGAGTTTGATGATGGGCATAGGGCAGAAGGACTGCTATGTGAGGAATGA +GGTCCAGAACAAGTGAGGCATCCTGACCCTGAAGTACCCCACTGAGCACTGCATCATCACCAACTGGGAA +GACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGTTGTGGCTCCCAAGGAGCACCCTGTGCTATT +GACCAAGGTCCCCCTGAACCCCAAGGCCAACCATGAGAAGATAGCCCAGATCATGTTTGAGACCTTCAAC +ATCCCAGCTATGTACATGGCCATCTGGGTCATGCTGTCCGTCTAGCCTCTGGCCATACCACTGGCATTGT +GATGGATTCCAGTGGCAGGTTCACCTACAGTGTGCTCATCTCCGAGGACTATGCCCTTCTCTATGCCATC +CTGCATCCAGACCTGGCTTGCCGGGACCTATCTCATGAAGATCCTCCCCTAGTGAAGCTATAGCTTCACT +ATCATGGCAGAATGGGAAATTATGCATGACATCAAGGAGAAGCTGTGCTGGATCATCTTGGACTTCAATC +AGGAGCTGACAGCCCCTGCATCCTTCTTTTCCCTGCCAACAGCCAGGTAATTACCATCTGCAACAATCTC +TTCTTGATAGGTCCCGGCTCTCTTCCACACTTCTTTCCTGCATATGGAATCTTGTGGCATCCATGAAACT +ACTTCCAACTCCATCATGAAATGTGATGTGAACATGCACAAGAACCTGTACTCCAACACAGTGCTATCTG +GTGGCACCACCATGTACCCGAGCATCCAGGACAGGATGCAAAAGGAGATCACTGCCCTGGCCCCCAGCAC +AATAAGATCAAAATTATTGTGCCCCGTGAGCACACATTCTCTGTGTGAATCAGCGGCTTCATCCTGGCCT +CCCTGTTCACCTTCTAGTGGATTTGGATCAGCAAACAAGAATACTAAAAATCCATCCCCTCCATCGTCCA +CTACAAATGCTTCTAGGCAGACTGTTACTTAGTTGTATTACACCGTTTCTTGATAAAACCTAACTTGCAC +AGGAAACAAGATGAAATTGGCATGAACATATTTGTTTTTTGTCTGTTCACTTTGGGGTTTTTGGCCTGGT +GACTCAGGATTTAAAAATGAACAGTGACAGTGAGAGCGGTCAGTTGGAGTGAGCATCTCCCAAAATTCTA +CAATGTGGCAGAGGACTTCGATCATACATTGTTCTTTTTAAAAAAATGGTCATTCTACATATCATGAGAT +GCATTGTTGTAGAAAGTCCCTTGCCCTCCCAAAAGCCATCCCACTTCTCTCTAAGAAGAATGGCCTAGTC +ATCTCCCCATCCACACAGTGGAGGTGACAGCGTTGCTTTCTTGTAAATTATGTAATGCAACATTTTTTAA +ATCTTCACCTTCATACTTTTTTATTTTGTTTTATTTTGAATGATCAGCCATCATGGCCCTCTTTTTGTCC +CCCAGCTTGAAATGTATGAAGGTTTTTCATCTTCCTGGGAGTGGGTGGAGGTGTGGAGGCAGTCGATACT +GGTACTGACTTGAGACCACTTCAATAAAAGTGCACACCTTAAAAAAAGTCATCAGTAAGTAAAATTTGGA +AAATATAATCTATAATGAGGAGAAAAATCAACTGAAACTGAACTAAAAATTATACAAATAATAGAATTAG + +>NG_022284.2 Homo sapiens actin beta pseudogene (LOC100132223) on chromosome 3 +ATAGGAAGGAATATTTGCAAACTATGCCTCTGACAAAAGTCTACTATTCAGAATCTATAAGGAACTTAGA +CAAATCAACAAGCCAAGAACGACTGCATTCACCTCTGAGACCGCATCTGCCCCATAAGCACAGAGTCTTG +CCCTCGCCGCTCTGCCACGGGTCCACACCCACTGCCAGCTCATCATGGATAATGATATCGCCACGCTCGT +CATGGACAATGGCTCTCCCATGTGCAAGGCCAGCTTAGCAGGCGACGATGCCCCTCCATCGTGAGGCACC +CATGGCACCAGGGCATGATCGTGGGCATGGGTCAGAAGAAGTCCTACGTGGACAATGAGGCCCAGGGCAA +GAGAAGCATCCTGACCCTGAAATACCCTATCGAGCATGGCATTGTCACCAATGGAGAAGATCTGGCACCA +CACCTTCTTCAACGAGCTGCATGTGGCTCCTCAGGAGCACCCTGTGCTGCTGACTGGGGCCCCCCTAAAC +CCCAAAGCCAACCGTGGGATGACCCAGATCATGTTTGAGACCTTCTACACCCCAGCCATGTAGGTGGCCA +TTCAGGCTGTGCTTTCCCTGTAAGCCTCTGGCTGTACCACTGGCACCGTGATGGACTCTGGCAGGGTCAC +CCACACTGTGCCCATCTACAAGGGGCACGCCTTCCCTGGTGCCATCCTGCATCTGGACCCGGCTGACTAC +CGCATGAAGAGCCCCGGGAAGTGCAGCTACAGCTTCACCACCACCGCTGAAGAGAGCGTGAGACATCAAG +GAGAAGCTGTGCTACCTCACCCTGGACTTCCAGCTCCTCCCTGGTCACTGTGGCCTCCAGCTCCTCCCTG +GAGAAGAGCTACAAGCTGCCTGAAGCCCAAGTCGGCACCATCAGCAACAAGCTGGTCCTCTGCCTCAAGG +CTCTTTTCCAGCCTTCTTTCCTGGGCATGAAATCCTGTGGCATCCACGAAACTACCTTCAACTCCATCAT +GAAGTGTGACATGGACATTTGCAAAGACCTCTACACCAATGCAGTACTGTCCAGTGGCACCACTGTGTAC +CCTGGCATCCCCCACAGGATGCAGAAGGAGATCACCACCCTGGCTCCCAGCACAATGCAGATAAAGATCA +TTGCTCCTCCTGAGCGCAGATACTCTGTGTGGGTCCAGTGGCTCCATCCTGGCCTGGCTGCCAGGCTTCC +AGCAGATGTGGATCAGCAAGCAGCAGTACCACAAGTCCCACCCCTCCATTGTCCACCACAGATGCCTCTA +GGAGGACTGTCGCTTAGTTTTCTTAGTTTCATTACACTCTTTCTTGACAAAAACCAAACTGGCACAGAAA +ACAAGATGACATTGGCATGCCTTAATTTGTTTTTGTTTTTTGTTTGTTTTCGTTTTTGTTTTCGGCTTGA +CTCAGGATTTAAAAATTGGACCATGACAGTGTCAGCAATGGGTTGGAGCCAGCATCGC + +>NG_021768.2 Homo sapiens actin beta pseudogene (LOC390029) on chromosome 11 +ACACCCGCCGCCCTCCACACCCGCCGCCCTCCACACCCGCCGCCCGTCCACACCCGCCGCCCGTCCACAC +CCGCCGCCCTCCACACCCGCCGCCCTCCACACCCGCCGCCCGTCCACACCCGCCGCCCGTCCACACCCGC +CGCCCTCCACACCCGCCGCCCTCCACACCTGCCGTCTGTCCACACCCACCCAGCTCACCATGGATGATAA +TATCACCTTGCTTGTCATAGACAACACCTCTGGCATGTGCAAGGCCAGCTTCACCGACGACGATGCCCCC +TGGGCCGTCTTCCCCTCCATCGTGGGGTGCCCCAGACACCAGGGCATGACGGTGGGCATGGGTCAGAAGG +ACTTCTATGTGGGTGGCGAGGCCCAGAGCGAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAGCATGG +CATCATCAGCAGCTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGGGAGCAC +CCGGTGCTGCTGACCGAGGCCTCCCGAGCCCCAAAGCCAATAGAAAGAAGATGACCCAGATCATGTTTGA +GACCTTCAACACCTCGGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCAAGTACACTCCTGGCCATACC +ACTGGCATCATGATGAACTCCAGCGACGGGGTCACCTGCACAGTGTCCATCTATGAGGGCTACACCCTCC +CCCATGCCATCCTGTGTCTGGACCCGGCTGGCCGGGACCAGACTGACTACCTCACAAAGATCTCACTGCG +CATGGCTACGGCTTCACCACCACGGCCGAGCGGGCGATCACGTGTGACATTAAGGAGAAGCTGTGCTATG +TTGCCCTGGACTTCAAGCAGGAGGTGGCCACGGCGACCACCAGCTCCTCCCTGGAGAAGAGCTATGAGCT +GCCTGACAGCCAGGTCATCCCCACTGGCAACGAACGGTTCCGCTGCCCCGAGGAGCCCTTCCCGCCTTCC +TTCCGGGGTGAGTGGAGACCCCCTCCTGGCCCTGCCCACAGGAAGGTCACCCTCGGGGCCATGCTGTGGA +AGCTGAGGCTGGCCCTCATTTCCCCCTCAGGCATGAAATCCTGTGGCATCCACGAAACTATCTTCAACTC +CATCATGAAGTGTGACATGGACATCCTCGAAGACCAGTACACCAACACAGTGCTGTCTGGAGGGACCAGC +ATGCACCCCAGCATCACCCACAGGGTGCAGAAAGAGATCACCGCCCTGGCGCCTGGCACGATGAAGATCA +ACGTCATTGCTCCTCCCGAGCGCAAATACTCTGCGTGGATCAGCGGCTCCATCCCGGCCTCGCCATCCAC +CTTCCAGCAGATGTGGATCAGCAAGCAGGCGTATGACGAGCCTGGCCCCTCCATCCTCCACCGCAAATGC +TTCTAGGCAGACTGGACTTAGCTGTGGTACACTCTTTCTTGACAAAACTTTGTGCAGAAAACAAGATGAG +ATGGGCGTGGCTTTTTTTTGTTTTTTGTTTGTTTTTGATTTTTTTGTTTTTTTTGGCTTGACTCAGGAAT +TAAAAACTGGAACGGTGAAGGTGACAGCGGTCGGTTGGAGGGAGCATCCCCCAAAGTTCACAATGTGGCC +GAGGACTTTGATTATACATTGATCTTTTTTTTAAATAGTCATTCCAAATGTCGTGAGATGCAATGTCACA +GGAAGTCTCTTGCCCTCCTA + +>NG_005779.3 Homo sapiens actin beta pseudogene (LOC402221) on chromosome 5 +TTGGAAAATTTTCTAGACATGCTAAGCTAAGTGTATTAGTCCATTTTGACACTGCTGATAAAGACATACC +TGAGACTGGGAAGAAAAATAGGGTTAATGGACAGCCGAGACCACGTCCGCCCCGCAAGCACAGAGCGTCG +CCCTCCCCGCTCTGCCGGGCATCCATGCCCGCAGCTAGCTCACCATGGATGATGATATCAGCACGCTCCT +CATCAACAAGGGCTCTGGCATGTGCAAGGCCGGCTTCACAGGTGACAATGCCCCCGGGCCATCTTCCCCT +CTGTCATGGGTGCCAGGGAGTGATGGTGGGCATGGGTCAAAAGGACTCCTATGTGGGTGATGAGGCCCAG +AGCAAGAGAGGCATCCTGACCCTGAAGTACCCTGTGGAGCACGGCACCAACTGGGACGACATGGAGAAGA +TCTGGCACCACACCTTCTACAACAAGCTGTGTATGACTCCTGAGGAGCACCCCATGCTGTTGACCCAGGC +CCCCCTGAACCCCAAGGCCAATCATAAGATGACCCAGATCACGTTCGAGACCTTCAGCAATACCCCAGCC +ATATACATGGCCATCCAGGCTGTGGTGCTGTCCCTGTACGCCTCTGGCCTTACCACTGGCATTGTGATGG +ACTCTGGTAACGGGGTCACCCACACTGCCCATCTACGAGTGGTATGCCCTCCCCCACGCCATCCTGCGTC +TGGACCTGGCTGGCCTGGACCTGACTGACTACCTCATGAAGATCCTCACCGAGTGGGCGCTACAGCTTCA +CCACCACGGCTGAGCAGGAAATCATGCATGACATCAAGGAGAAGCTGTGCTATGTCACCCTGGACTTTGA +GCAGGAGATGGCCACAGTGGCCTCCAGCTCCTCCCTGGAGAAGATCTACGAGCTGCCCGACCTCCCGATA +GCCAGGTCATCACCATCAGCAATGAGAGGTTCCACAGCCCCCAGGCCCTCTTCCAGCCTTCCTTCCTGGG +CATGGAATCCTGTGGCATCCTACTGTCAACTCCATCATGAAGTGTGACATGGACATCCGCAAAGACCTGC +ATGCCAACACAGGGCTGTCTGGCGGCACCACCATGTACCCTGGCATGGCAGGACAGGATGCAGAAGGAGA +TCACCACCCTGGTGCCGTTGCTCCTCTGGAGAGTTAGTACTCCGTGTGGATCAGCGACTCCATCCTGGCC +TCGCTTTCCACCTTCCAGCAGATGTGGATCAGCAAGGAATACGACGAGCCTGACCCCTTCCTCATCCACC +GCAAGTGTTCTAGGCGGATTGTAACTTAGTTGCATTATACCCTTTCTTGACAAAACCTAACTTGCGCAGA +AAACAAGATGAGATTGGCATGGCTTTATTTGTTTTTTTGTTTTGTTTTGTTTTTGGCTTGACTCGGGATT +TAAAAACTGGAATAGTGAAGGTGACAGCAGTTGGCTGGAGGAAGCATCCCCCAAAGTTCTGCAATGTGGC +CGAGGACTTTGATTGTACATTGTACATTTTTAAATAGTCATCCCAAATATCATGAGATGCATTGTTACAG +GAAGTCCGTTGCCCTCTTAAAAGCCACCCCACTACTCTCTAAGGAGAA + +>NG_022596.2 Homo sapiens actin, beta pseudogene 1 (ACTBP1) on chromosome X +TTTGGAGTTTAGACACAACTCAGCATTACTATTAAAATAGAGATCCTAAGAGTGACAGAAGAAATTCTTT +GTAGCAATAAGATAACAACTCCAGACTGTGGAGACTGCATCTTCCTGGCGGGCACAGAGCCTCACCCTCC +CCACTCCATCACCAGTCCACACCCACTGCCAGATCACCATGAATGATGATATCACTGCTCTCGTCTTCAA +CAAAGGCTCTGGCATGTGCAAGGCTGCCTTCATGGGCGATGATGCCCCCCAGTTGTCTTCCCCTCCATCA +TGTGGTGCCCGTGGCACCAGGGCGTGATGCTGGGCATGGGTCAGAAGGACTCCTACATGAGCGATGAGGT +CCAGAGCAAGAGAGGCATCCTGACCCCACCCTGAAATGCCCCATGGAGCACAGCATTGTCACCAAATGGG +ATGACATGGAGATCTGGCACCATAACTTTTACAACAAGCTATGTGCGGCTCCCGAGGAGCACCCCATGCT +GCTGACCGAGGCCCCCCTGAGCCCCAAGGCCAACCATGAGAAGATGACCCAGATCATGTTTGAGACTTTC +AATGCCCCAGCCATGTACTTGACCATCCAAGCTGGTATGCCTCTGGCAGTACCACTGGCATCGTGATGGA +CTCTAGCGATGGGATCACCCACACTATGCCCATCTATGAGGGGTACACCCTCCCCCATGCCATCTTGCCT +CTGGACCTGGCTGGCCAGGACCTGACTGACTACTTCATGAAGATCCTCAAGGAGGGCGGCTACAGCTTCA +CCACCACTGCTGAGCGGGAAATCATGCTTGACATCAAGGAGAAGCTGTGCTACATCACCCTGGACTTCGA +GCAGGAGATGGCCACTGCAGCCTCTAGCTCCTCCCTGGAGAAGAGCTAGGAGCTGCTCAACGGCCAGGTC +ATCACCATCAGCAACCAGTGGTTCCACTGCCCCAGTACCTCTTCCAGCCTTCCTTCCTGGGCATGGAATC +CTATGGCATCCACGAAACTACCTTCACCTCCATCATGAAGTGTGATGTGGACATCTGCAAAGACCTGTAC +GCCAATACAGTGCTGTCTGGCGGCACTACCATGTACCCTGGCATTGCCGACAGGATGCAGAAGGAGATCA +CTGTCCTGACTTCCAGCACAGTAAAGATCAAGATCATTGCTCCTCCTGTGCATAAATACTCTGTGTGTTT +CGATGGCTCCATCCTGGCCTCCCTGTCCACCTCCCAGCAGATGTGGATCAGCAAGCAAAAATACCAAGAG +GCCGGCCCCTTCATCACCCACAGCAAGTGCTTCTAGGCGGACTGTTACTTAGTTGCATTACACCCATTCT +TGACAAAAACCCAACTTGCCAGAAAACAAGATGAGATTGGTGTGGCCTTACTATTATTATTATTATTATT +ATTATTTGTTGTTGTTGTTGTTGTTGTTTAGCTTGACTCAGGATTTGAAAACTGGAAAGGTGGAGGCGAC +AGCAGTCAGTTGGAGTGAGCA + +>NG_007577.3 Homo sapiens actin, beta pseudogene 11 (ACTBP11) on chromosome 1 +GAACATCACACACTGAGGCCTTTCCAGGGTGGGGGTGAAGGAGAGGGAGAGCATTAGGACAAATACCTAA +TGCATGCGGGGCTTAAAACCTAGATGATGGACTGCCAAGACCATGTCTGCCAGGTGAGCACAGAGCCTTG +CCCTCGCTGCTCTGCAGCCTGTCCACACCCGCCGCCAGCTCACCATGGATGATGATATCGCGGCGCTCGT +CATTGACAACAGCTCCGGCATGTGCAAGGCTGGCTTCACAGGGGATGATGACCCCTGGGCCATCTTCCCT +TCCATGGTGGGGCGCCCCAGGCACCAGGGCGTGATGGTGAGCATGGGTCAGAAGGATTCCTATGTGGGTG +ACGAGGCCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTG +GGACGACATGGAGAAGATCTGGCACCACATCTTCCACAATGAGCTGCGTGTGGCTCCCAAGCAGCACCCC +GTGCTGCTGACCAAGGCCCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCACATCATGTTTGAGAC +CTTTAACACGGCAGCCATGTACGTGGCCATCCAGGCTCTGCTGTCCCTGTACGCCTCTGGCCGTACCACT +GGCATCATGATGGACTCTGGTGACGAGGTCACCCACACTGTGCCCTTCTACGGGGGGTATGCCCTCCCCC +ACGCCATCCTGTGTCTGGACCTGGCTGGCCGGGACCTAACTGACTACCTCATGAAGATCCTCACGGAGCG +CGGCTACAGCTTCACCACTACGGCTGAGCAGGAAATCGTGCATGACATCAAGGAGAAGCCGTGTTACATC +GCCCTGGACTTCGAGCAGGAGATGGCCACGGGGGCCTCCAGCTCCTCCCTGGAGAAGAGCTACAAGCTGC +CTGATAGCCAGGTCATCATCAAAGCAGTTCTGCTGCTCTGAGGCACTCTTCCAGCCTTCCTTCCTGGGCA +TGTAATCATGTGGCATCCATGAAACTACCTTCAACTCCATCACGAAGTGTGACGTGGACATCTGCAAAGA +CCTGTACTCCAACACAGTGCTGTCTGGCAGCACCACCGTGTACTCTGGCCTGCATAGCGGACAGGATGCA +GAAGGAGATCACCGCCCTGGCCCCCAGCACGATGAAGATCAAGATCATTGCTCCTCCCGAGCGCAAGTAC +TCCGTGTGGATCGGCACCTCTATCCTGGCCTCTCTGTCCACCTTCCAGCAGATATGGATCAGCAAGCAGG +AGGAGTATGACAAGTCTGGCCCCTCCACTGTCCACTGCGAATGCTTCTAGGCGGACTGTGACTTAGTTAC +ATTACACCCTTTCTTGTCAAAACCTAACTTGAGCAGAAAACAATATGAGATTCGCATGGCTTTATTTGTT +TTTGTTTTTTTTTTTTTTGGCTTGACTCAGGATTTAAAAACTGGAATGGTGAAGGTGACAGCAGTCTGTT +GGAGCGAGCATCCCCCAGAGTTCTACAATGTGGCCGAGGACATTGATTGTACGTTGTTCTTTTTTTAAAA +AATAGTCATTCCAAATATCATGAGATGCATTGTTACAGGAAGTTCCTTGCCCTCCTAAAAGCCGCCCCAC +TTCTCTCTAAGGAGAATGGCCCAGTCCTCTCCCACATCCACACAGAGGAGGTGATAGCATTGCTCTCATG +TAAATTATGTAATGCCAATTTTTAAAAATCTTCACCTTAACACTTTTTTATTTTGTTTTATTTTGAATGA +TCAGACTTTGTGGCCCCCTTTTTTGTCCCTCAACTTGAGATGTATGAAGGCTTTCGGTCTCCCTGGGAGT +GGGTGGAGGCAGCCAGGGCTTACCTGTACACTGACTTGAGACCAGTTGAATAAAAGTGCGCACCTTAAAA +AAAAAAACCTAGATGACGGG + +>NG_000840.5 Homo sapiens actin, beta pseudogene 8 (ACTBP8) on chromosome 6 +AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAAGAAAGAGCAAGTTACTATAGCGGTAGGGGAGA +TGTTGTAGAAATATATATAAACCTCCTTACACCGCGGAGACCGCGTCAGCCCAGCGAGCACAGAACCTTG +TCCTTGCCGCTGCGCCTTGCGTCCGCACCCGCCGCCAGCTCACCATGGATGATGCTATCACCGCGCTCGT +CGTCGTCGACAACTGCTCCAGCATGCGCAAGGCTCCCCAGGCCGTCTTCCCCTCCATTGTGGGGCACCCT +AGGCACCAGGGAGTGATGGTGGGCATGGGTCAGAAGGACTCCTATGTGGGCAAGGAGGCCCAGAGCAAGA +GAGGCATCCTGACTCTGAAGTACCCCATCAAGCATGGCAACGTCACGAACTGGGACAACATGGAGAAGAT +CTGGCACCACACCTACAACGAGGTGCGTGTGACTGCTGAGGAGCACCCCGTGCTGCTGACTGAGGCCCCC +CTGAACCCCAAGCTCAACCATGAGAAGACGACCCAGTTCATCATGTTTGAGACCTTCAACACCCCAGCCA +TGGATGTGGCCATCCAGGCCGTGCTGTCCCTGTATGCCTCTGGAGGTACCACTGGCATCGTGATGCACCC +CGGTGACAGGGTCACCCACACTCTGTCCATCTAGGAGGGGTACGCCCTCCCCACGCCATCCTGCGTCTGG +ACCTGGCTGGCGGGGACCTGACTAACTACCTCAAGAAGACCCTCACCCAGCACAGCTACAGCTTCACCAC +CACGCTGAGCAGGAAATCATGTGTGACATCAAGGAGAAGCTGTGCTACGTCGCCCTGGAATTCGAGCAGG +AGATGGCCTCGGCGGCCTCCAGCTCCTCCCTGGAGAAGAGCTATGAGCTGCCAGATGACCAGGTCATCAC +CATCGACAATGAGCGGTTCCGCTGCCCCGAGGCACTCTTCCAGCCTTCCTTTCTGGGCATGGAATCCTGT +GGCATCCATGACACTACCTTCAACTCCATTATGAAGTGTGACGTGGACAACCACAAAGACCTGTACGCCA +ACACAGTGCTGTCTGGCGGCACCAACATGTACCCTGGCATCACAGACAGGATGCAGAAGGAGATCACCAC +CCTGGCGCCCAGCACGATGAAGATCAAGATCATTGCTCCTCCCCAGTGCAAGCACTCCGTGTGGATTGGC +TACTCCATCCTGGCCTCCACGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTAGGACGAGTCCG +GCCCCTCCATCGTCCACCACAAATGCTTCTAGGCTGACTGTGACTTAGTTGCATTACACCCTTTCTTGAC +AAAACCTAACTTGCACAGAAAACACGATGAGATTGGCATGGCTTTATTTGTTTTTGTTTTTGTTTGTTTG +TTTGTTTTGGCTTGACTCAGGATTTAAAAACTGGAACGGTGAAGGTGACAGCAGTTGGTTGGAGCGAGCA +TCCCCCAAAGTTCTGCAATGTGGCCGAGAACTTTGATTGTACATTGTTCTTTTTTTAATGGTCATTCCAA +ATATCGTGAGATGCATTGTTACAGGAAGTCCCTTGCCTCCTAAAAGCCACCCCACTTCTCTCTAAGGAGA +ATGGCCCAGTCCTCTCCCGAGTCCACACACGGGAGGTAATAGCATTGCTTTTGGGTAAATTATATAATGC +AAAAATCTTTTAATCTTTGCCTTAATACTTTTTTATTTTTTTAATTTTGAATGATCAGCCTTTGTGACTC +CCCTTTTTTGTCACCCAACTTGAGATGTATGAAGGCTTTTCATCTCCCTCGGAGTGGGTGGAGGCAGCCA +GGGCTTAACTGTACACTAACTTGAGACCAGTTGAATAAAAGTGCATACCAAAAAAAAGAAAAAAAAACCT +CCTTGCATATGGTAATAGGCATGAAAAAAAAAAGTCTGCAAGAAGAAACCCCAAATTATTAACAATAGTT +ATCTTGTAG + +>NG_032756.1 Homo sapiens actin, beta pseudogene 10 (ACTBP10) on chromosome 14 +ATGAAACATCAGAGCCAGCTAAGAGAAAAGAAATATTTGGAGGAAATTGAAAGTGTGGAAAAAAAGAATG +ATAATCTTTTAAAGGGTCTACAACTGAATGAGCTCACCATGGATGATGATACTGCCGTGCTCGTCATTGA +CAACGGCTCTGGCATGTGCAAGGCCGGCTTTGCAGGTGACGATGCCCCCCGGGCTGTCTTCCCTTCCATC +GTGGGGTGCCCCAGGCACCAGAACATGATGGGGGGCATGCGTCAGATGGAGTCCTATGTGGGCAATGAGG +CCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATGGAGCACGGCATCATCACCAACTGGGACGA +CATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCCGAGGAGCACCCCATCCTG +CTGACCGAGGCACCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTCA +ACACCCCAGCCATGTACGTGGCCATCCAAGCCGTGCTGTCCTTGTACACCTCTGGCCGTACTACTGGCAT +TGTGATGGACTCTGGTGACGGGGTCACCCACACTGTGCCCATCTATGAGGGGAATGCCCTCCCCCATGCC +ACCCTGCGCCTAGACCTGGCTGGCCGGGAACTGACTGACTACCTCATGAAGATCCTCACCGAGCGTGGCT +ATAGTTTCACCACCATGGCCGAGCAGGAAATCGTGCGTGACATCACAGAGAAGCTGTGCTATGTTGCCCT +GGACTTCGAGCAGGAGATGGCCACAGCGGCCTCCAGCTCCTCCCTAGAGAACAGCTATGAGCTGCCCAAC +GGCCAGGTCATCACCATTAGCAACGAGCGGTTCCGCTGCCCCGAGGTGCTCTTCCAGCCTTGCTTCCTGG +GCATGGAATCCTGTGGCATCCACGAAACTACCTTCAACTCTATCATGAAGTCTGATGTGGACATCCACAA +AGACCTGTACACCAACACAGTGCTATCTGGTGGCACCACCATGTACCCTGGCATTGCCCACAGGATGCAG +AAGGAGATCGCTGCCCTGGCGCCTAGCACGATGAAGATCAAGATTGTTGCTCCTCCCAAGCGCAAGTACT +CCGTGTGGGTCGGTGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGA +GTATGATGAGTCAGGCCCCTCCATTGTCCACCGCAAATGCTTCTAGGTGGACGCTGACTTAGTTGCATTA +CACCCTTTCTTGACAAAACCAAACTTCGCAGAAAGCCACATGAGATTGGTATGGCTTTAATTGTTTTCTT +ATTTCATTTTTTGTTTTGTTTTTTATTGGCTTGACTCAGGATTTAAAAACTGGAATGGTGAAGGCGAGAG +CAGTTGGTTGGAGTGAGCTTCCCCCAAAGTTCTACAATGTGGCTGAGGACTTTGATCGTACATTGTTTTT +CTTTTCAATAGTCATTCCAAATATTGTGAGATGCATTGTTTCAGGAAGCCCCTTGCCCTTCTAAAAGCCA +CCCCACTTCTCTCTAAGGAGAATGGCCCAGTCCTCTCCCTAATTCACACAGGGGAGGTGATGGCATTGCT +TTCATGCAAATTACGTAATGCAGAATTTTTTGAATCTTTGCCTAAATACTTTTTAATTTTGTTTTATTTA +GAATGATCAGCCTTCGCGGCCCCCCTTTTTTGTACCCCAACTTGGGGTGTATGAAGGCTTTTGGTCTCCC +TGAGAGTGGCTGGAGGCAGCCAGGGCTTACCTGTACTCTGACTTAAGGAGAGTTGGAAAAAAGTGCACAC +CTTAAAAAAAATTCAATGAGGAAGCATTAACAAAAACAGTATTTCTGTACAGTGGACAGCTTAGCATGTT +GACAACTGAGAATAAAATGCTCAGTTCTGAACTGGACA + +>NG_032175.1 Homo sapiens actin, beta pseudogene 3 (ACTBP3) on chromosome 18 +AGTGATGGGGAAGAGAGACAAGCAGCTAGAAATGGCTTTTGGGCAAAAGAAGATTTAACCATGTTCTTCA +AAGTGGTTCTTTTTTTCCCCCTTTTTTAAAGTGTTCACTTTTTGTCAACTGGTCTCAAGTTGGTGTACAG +TTAAGCCCTGGCTGCCTCCACCCACTCTCAGGGAGACCAAAAGCCTTCACACATCTCAAGTTGGGGGACA +AAAAAGGGGGACCATGAAAGCTGGTCACAAATGAAACAAAGTTTTAAGGAGAAGATTTAAAAAATTTTGC +ATTACATAATTTACATGAAAGCAATGCTAATGCTATCACCTCCCCTGTGTGGACTCCAGAGAGGACTGAG +CCATTCTTCTTAGAAGTAGGGTGGCATTTAGGAGGGCAAGGGACTTCCTGCAACAATGCATCTCGCAATA +TTTGGAATGATTATTTAAAAAAAAGAACAATGTACAGTCAAAGTCCTTGGCCACATTGTAGAGCTTTAGG +GTATGCTCGCTCCAACTGACTGCCATCACCTTCACCACAGAAAACAAGATGAGATAGGTTTGGCTTTGCG +TTTTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTTGGCTTGA + +>NG_028183.1 Homo sapiens actin, beta pseudogene 13 (ACTBP13) on chromosome 3 +TGCTCAGAATCTTCAAGTCAATCCCCAGGGGGCTGTGATGTGTAAGGTCACCATGGCAATGGAGTGAGGG +CAGGGCACCTAGGGCATGGAGCAGGAGGACTATGGAAGCCACCAAGAAGGTGGGGGGCCCTGATCCATCG +GGTCCCCAGGACCACCCCTCAGCCGGCAGCCAGCAGCTGGGGAGTGGCCTCAGAGGGTCTCAGGGACCAC +GGATAAGCTCAGAATCCCTATACTTCAAGCAGGGGTTGTCATTGTCTACCAAGACCATCACTGATGGTGC +CTGTGGCCCAGCCTCCCAGGCCTGCATCCCTGGGTCCATTTGCCAGCTACTCCAGGATCCTGCTTGGGTT +AGCTCCCAGTGCTGCTGTGAGCAGGCCTCCCAGGATGCCCCGAGACTCTCCTCCACTAGTGTATCTTCAA +GTCCCATTGTGGGAGCCCAACAACATCTCATCATGGAGGATGTCACCCTGACCTTACCAGAGTGCATGCA +CAGTGACAGCACCAGTGACATAGCCCAGTGTGGACCCTGCCACCTTCGGTTTCAGGTGCAGAATTTGGGG +GAAGGCAAGCGTCCAGCTAAGGTCCTGGTAGGCTGGGGCAAAGGCCCCTGCAGCTCCGACCAGATAGCCT +CCTTGGGCAGCAGGAAGAGTCGGTGGCTGCCCTTCCTCCTCTCAGGAGAGAATGGTGCTCCCGAAGCCCA +AGGTGCTCTTCTGGCTCCAGCTCAGGATCTAGCCCAAGATCAGGACCAGGGTAAGTGTCCAGCTCAGGCT +GCTGCCCTAGTTACACATTCTTTTTTAAAATTTCTTTCTTTCTTTTTTTGAGATGGAGTTTTGCTCTTGT +TGCCCAGGCTGGAGTGCAATGGCGCGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTC +TCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACACGTGCCCGCTATCACATCCAACTAAGTTTTGTATTT +TTAGTAAAGACTGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAATTCCCAACCTCAGGTGATCCACCTG +CTTTGGCCTCCCGAAGTGTTGGGATTATAGGTGTGAGCCACCGTGCCCGGACTTACACCTTCTTTTCTGT +CACTGACTCCTCCAATTCCAGCTTGGGCTACGACTCCAGCTCTGGATGTTACCCCAACCCCCACTGCAGT +TGAAACTGACATCCATACCATTGATCACCTGACTGACACCACTGCAGTCACCAAGGGCCCATCTCAAGAC +CTCCTTCTCAGGAAGTGTGGCAATCAGTGGTCAACTGTCTTGGAGTCTTCCAAAATAGTTGCATCTTGCC +AGGACAAAGTGAATCTCCACTCTAAAGAGGAGGCTCCCATCCCAAAGCCTACTCTAGAAGAGCGCCCAGA +CCATGCCCAGGAGGAGGAGGTTACCAGAAGGAAGGTGCCCAGAAGGAAGGTGCCAACTGAGGAGGCTGAG +AACCCCATGAAGAAACTTCCAGTCTCTACCTCCAGGCCAGGCAGCCCAATGCCAGGCCCAGAGCCCCCAG +TTATCTCCAAGTCCCAGAGGAGTAGCCAGGAGATCTGTAGCTCTCAGCCACAGAAGCAGCTCCCCAATGT +CTGTGACAATACCAGCTCTAATGTGCCACTGTCTGCCTACCAAGTAACCTGCCACAAGCAGTCCCCATTC +CAGTCTCCGAAGGAAGCCATGCAGATCCCCCTCTCCAGTGCCCCAACCTGCCAGCTTCAGGAAGTTGTGG +AGGACCGTGTGCTGGTATTTGATGGGGCTGCTGTGCCATGACCCTGTGGGCTCACGGGCAGTGCTTGTGG +GCCTCATGCCCAGCCACCCATCCATCTATGTCCCTGAAAATATGCTGTCCACCCAGCTGTCGGCCAAACC +CATCCTGTCTCCTGACAGCAATCACTCCAGCTTTTGGTCTATCACACCCATGCTGTCCAGCCCAGTGCCC +TGCAGCCTCTCATCTGGCAGCTACCGAGAGGTAGCCCTGATTCCCAAGGAGGCCAGGCTCAACCTGGAGT +CATGGGACTCCCCTGGTACTGAGACACCCATCAGGGTTGGGATGCTGACTGGGCCTGTTCCACTGGGGAT +GCCCCTCCAATTTGATGAGAGGATACTGACCCATGTCCCTAATACTAGCTGGTCCAAGCCTGATGGTGAA +AAAAATGAACCTAGTCATACCATCTGGATGCTAGACCCTTCCATGGCACCCTCTAGGATGCCAGATGCCT +CCATAGTCCAGACCAAGAAACTGCAGTGGATGAACTCAGAGCCTGCTGCACCAGCCGATACCCAGGAAGT +GCCCAGATCCCTCCTCCAGGAAGACATAGGCAGCCACGAAGAGGTCATTCCTGCTCACCCTGATAACCCT +CAGGCCAAAGATGCTGGACAGACTCTCCTCACTGGGCAGATCCTCCTTGCTGGACAGCCACCCCTACCTG +AGCACCCCCTTACTGATCAACCCCCTCTCACTGGGCAGACACCCCTTGCTAGGAATCCCTCTTTATCTAA +AGAACCCCCCATCACCAAAGAGCCCACTCTTTCAAGATGGTCCCCCAACCCTGGAGAACCTGGCCAGGTC +TCCACCCAGGAAGATGAGCCCTTAGGCCTGCCTACTCATGTAGGGGTATTTCAGGTGCCCCTGACCCCTG +AGGAGACCTGTATCTATATGAGTAGAGACAAGGTTGGCATCAGTAATACTCAGCACTCCATCACGCATCA +GCAGCAACCTGGCAACTCCCCTAGGACCCAGGAGGAGCAGCTTCCCTTGATCACATTTACCACACCTGGC +ACTGGACGCAAGGTCTTGCCCATGGCCATGGTGGCCACTGAGCCCCAGAGTGCCCCATTCAAGCTGACAG +CTGAGGATCTTACACACTTATCAGTAGTTGCACACCTTGGACTGCCCCACGGGGCCTGCTATGAACTGGT +GTCCACCATGGATGCTCTGCCAGTTCGGTCGCCAGTGCTCTGCTGCCACTCACTGGGACCCTTCCAGGAC +ATGGCGGCCGTGGTGATTGATACAGGCACAGGATTCACCAAATGTGGACTGGCGGGAGAGGACCATGTCC +TCAGTGTCATACCCTCACGAGTTCAGCTGCTGCAGCACCCAGCCCAGGGCCAGCCACGATATGCAGTGCC +TGAAAACCAAGTGGGATCCTATTCAGTGCTGAACCGTGGTGTGGTCTATGACTGGGATGCACTAGAGGTG +CTATGGCAGCACCTGTTCTATTGAAGGCTGGGTGTGCAGCCCGAGAAGCTGTCTGTGCTCGTAGCCGACT +CGCCCATCTCACCACTCACCAACCGAGAAAAGGTGGCTGAAATACTCTTTGAGCATTTCCATGTCCCAGC +CATGCAGACAGTGCATCAGGCCCTGCTGGCGCTCTATGCTTATGGACGTACCACTGGGCTGGTGCTGGGC +AGTGGCCATGGCACTTCCTATGTGGCACCCATCCTCACTGGGGATCTGGCCCCACTTGACACCTACCGGC +TGGATGTGGCTGGTGCTGACCTTACTGACTACTTGGCCCAGCTGCTGCAGAGAAGTGGCCACTCACTGCC +CCAGGCAGGACTGATCAACCAGATGAAAGAGGCCTGCTGCTACGTGGCCATGGATGTGGCAGCTGAGAGG +GCCCACACCCAGGCGCAGGCCGAGGTGGACTTTGTGCTTCCAGACAAGCAGGTTATCACGCTGGGGCCTG +AGCGCTTCTGCTGCCCTGAGGCCCTCTTCCAACCCAATCTGATAGGTCTCAACCAGCTGGGCCTTCCACA +GCTGGCCCTCCTAAGCATCAGCCGGTTGGAGGCCAAGCAGCAGGAGCAGCTACTGGCCAATGTGGTACTG +GACGGTGGCAGCACCCTCATGAGTGGCTTCCCTGAGCGCCTGAGACAGGAGCTGGGCCCTGGTGCCACTG +TGCTGGGGTCTCCCCACCGTGCAGTTGCTGCCTGGCTTGGGGGCTCCATCATGGCATCCCGGAGCTCTTT +CCAGAGCCTGTGGCTCAGCTGCCAGGAATATGAGGAAGAGGGCCCATGGGCTATCTATAAGTACCAGCTG +TGAGCATATAAAAGTTCTGGTTCTGCTTTCTTTAAGCACCGTGGCATGTTTCAGCCACAGGGTGGTGTGG +GAAAAGCAGGAGTCCAGGCATGGGGTCATGGA + +>NG_003019.4 Homo sapiens actin, beta pseudogene 2 (ACTBP2) on chromosome 5 +GAAATATTCATCTACAAGCAAAGATTATGAAGATATTATCCTATGTTTTATTTTAAAGAGATTTTTATTA +TTTTAACTTTCACATTTAGATCTACATTCCACCGCCGAGACTGCATCCGCCTTGCGAGCACAGAGCCTCG +CCTTCGCTGCTCCACTGCCAGTCCACACCTGCCACCAGCTCACCATGGATGATGATATCACCGCGCTCGT +CATTGACAACGGCTCCGGCATGTGCAAGGCCAGCTTCACGGGCGACAATGCCGCCCGGGCAGTCTTCCCC +TCCATCGTTGGGCACCCCAGGCACCAGGGCGTGATGGTGGGCATGGGTCAGAAGGATTCCTATGTGGGCG +ACGAGGCCCAGAGCAAGAGAGGCATCCTCACCCTGAAGTACCCCATTGAGCACGGCATTGTCACCAACTG +GGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGCGTGGCTCCCGAGGAGCAACCC +ATGCTGCTGTTTGAGGCCCCCCTGAACCCCAGGGCCAACTGCAAGAAGATGACCCAGATCATATTTGAGA +CCTTCAACACCCCAGCCATGTACTTGGCCATCCAGACTATGCTGTCCCTGTACGCCTCTGGCCGTACCAC +TGGCATCGTGTTGGACTCCAGTGATGGGGTCACCCACACTGTGCCCATCTACGAGGGGTATGCCCTCCCC +AACGCCATCCTGCTTCTGGACCTGGCTGGCCGGGACCTGACTACCTCATGAAGATCCTCACCGAGCGCCG +CTACAGCTTCATCACCACGCGGAGCGGGAAATCATGCGTAACATCAAGGAGAAGCTGTGCTACCTCGTCC +TGGACTTCGAGCAGGAGATGGCTACCGCGGCTTCCAGCTCCTCCCTGGAGAAGAGCTACCAGCTGCCCAA +CAGCCAGGTCATCACCATTGGCAACGAGTGGTTCTGCTGCCCCGAGGCGCTCTTCCAGCCTTCCTTCCTG +GGCATGGAGTCCTGTGGCATCCACGAAACTACCTTCAACTCCATCATGAAGTGTGACTTGGACATCCGCA +AAGACCTGTACACCAGCACAGTGCTGTCTGGTGGCACCACTATGTACCCTGGCATTGCTGACAGGATGCA +GAAGGAGATTACCGCCCTGGCGCCCAGCAGGACGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTAC +TCTGTGTGGATTGGAGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGG +AGTATGAGGAGTCTGGCCCTCCATCGTTCACCGCAAATGCTTCTAGGCGGACTGTGACTTAGTTGTGTTA +CACCTTTTCTTGACAAAACCTAACTTGTGCAGGAAACAAGATAAGATTGGCATGGCTTTATTTGTTTTTT +TGTTTTGTTTTGTTTTTTTGGTTTTTTTTGGCTTGACTCAGGATTTAAAAACTGGAACAGTGAAGGTGAC +AGCAGTCGGTTGGAGCGAGCATCCCCCAAAGTTCTACAGTGTGGCCGAGGACTTTGATTGTACATTGTTC +TTTTTTTTAATAGTCATTCCAAATATCATGGGATGCATTGTTACAGGAAGTCCCTTGCCATCCTAAAAGC +CACCCCACTTCTGTCTAAGGAGAATGGCCCAGTCGTCTACCGAGTCCACACAGGGGAGGTGATAGCATTG +CTTTCGTGTAAATTATGGAATGCAAAATTTTTTTAATCTTCGCCTTAATACTTTCTTATTTTTTTTATTT +TGAATGATGAGCCTTCGTGCCCCCCCCCCCTTTTTTGTCCCCCAGCTTGAGATGTATGAAGGCTTTTGGT +GTCCCTGGGAGTGGGTGAAGGCAGCCAGGGCTTACCTGTGCACTGACTTGAGACCAGTTGAATAAAAGTG +CACACACACACACATAAAAAGATCTACATTCCATCCAGAATTCATGTTTGTGTATGGTATGGGGTAGAAG +TTAATATTAAATATTTTTCTGGCCCAGTGCAGTGG + +>NG_021854.1 Homo sapiens actin beta pseudogene (LOC643307) on chromosome 5 +TAATAGGCTCAGTCACCAATGGACTGGCCCATGCTCCACGTTCTCTCCCAGCCGGGACACCTGGCTCCTT +GGCCAAAGCAGTGAAAGAAGAGATCATGGGCTGGTCATTGACAATGGCTCCAGCATGTGCAAAGCTGGCT +TTGCTGGACACAACGTCCCCCAACCCATGTTCCCCCTCCATCGTTGGGCACCCCTGACACCAGGGCATGA +TGATGGGCATGGGCCAGGACTCCTACATTGGTGACTAGGCCCAGAGCAAGCATGAAAGCCTGACCCTGAA +GCACCACATTGAGCATGACATCATCACCAAATACAATGAAATGGAGAAGATCTAGTTCCACATCTTCTAC +AACAAGCTGCGCATCACCTCTGGGGAGCTCCTGGTTCTGCTGACCAAGGCCTCCCTGAACCACTAGGCCA +CTCGTGAAAAGATGACCCAGATCATGTTGGAGACTTTCAACATCCCAGCCATGCAGGTGGCTATCCAGGT +TGTGCTTATTGCACGCCTCTGGCAGCACCACTGGCACCATGATGAACTCTGGTGATGGGGTCACCAACAT +GGTGCCCCTCTACCAGGGCTGTGCCCTCTTGCATGCCACCCTGCATCTGACCTGGCTAGCTGGGACCTGA +CTACCCTACAAATACCCTCACAGAGCAAGGCTACAGCTTCACCTCCATAGCCGAACAAGAAATCATGCAC +AACATCAAGGAGAAGCTGTGCTATCTCTCCCTGGACTTCCAGAGAAGATGGCCACCACAGCCTCCAGCTC +CTCCCTGGAGAAGAACTAGGGGCTTCCACACAGCAGGTAATCACCACTGGCAATGAACAGTTCCAGTGTC +TAGCCCTCCTTCCTGGGCGTGGAATCTTGTAGCATCCATGAGACCACATTCAACTACATCATGAAGTATA +ATGTGAACATCTGCAAGGACCTGTTTGCCAACACAGTGCTGTCTGGTGACACTATCATATACCTGGGCAT +CACTCACAGGATGCAGAAGGAGGTCACTGCCCTGGCGCCCAGCACCATGAGGATCAGGATCACCACTCCC +CTTGAGGGCAAGTACTCGGAATGGATTGGTGGCTTTATCCTGGCCTCGCTGTCCTCCCTCCAGCTGACGC +AGATCAGCAAGCAGTAGTGTGATGAGCTGGCCCCTCCATCATCCACTGCAAATGCTTCTAAATGGACTGT +GAGCAGATGCATAGCATTTGCTGCATGAGTTAATTCAGAAGTATAAATTTGCCCCAGGCAAATGTATACA +CCACATGCTAACCTCACA + +>NG_003162.3 Homo sapiens actin, beta pseudogene 9 (ACTBP9) on chromosome 18 +ACTGCCTGGTAGGCTCTACTACCTATCTCATAAACAGAAGGTGCTAAACAGAGGCACAGAACCTGGCTGA +ATTGTTGCTACCAGCTAAAATGGGTTCTAGACCGCGGAGACCGCATCTGCCCGGCGAGCACAGAGCCTTG +TCCCTTGCCACTCCGCCGCCCATCCACACCTGCTGCCAGCTCACCATGGATGATGATACTGTCGCCCTCG +TCATCGACAATGGCTCTGGCATGTGCAGGGCTGGCTTCGCAGGCGACAGTGCTCTCCAGGCCGTCTTCCT +CTCCATCATGGGGCACCCCAGGCACCAGGGTGTGATGGTGGGCATGGGTCAGAAGGACTCCTACGTGGGC +GACAAGGGCCCAGAGCAAGAGAGGCATTCTGACCCTGAAGTACCGCATCGAGCATGGCATCGTCACCAAC +TGGGAGGATATGGAGGAGATTTGGCTCCACACCTTCTACAGTGAGCTGCATGTGGCTCCTGAGGAGCACC +CCCTGCTGCTGACCGAGGCCTCTCTGAACCCCAAGGCCAACCACGAGAAGGTAAACCAGATCATGTTTGA +GACCTTCAACACCCCAGCCATGTATGTGGCCATCCAGGCCTTGCTGTCCCTGTAAGCCTCTGGCCATACC +ACTGGCATCGTGATGGACTCTGGTGATGGGCTCACCCACACTGTGCCCATCTACGGGGGGGTATGCCCTC +CCCCACACCATCCTGCATCTGGACCTGGCTGGCCCAGACCTGACTGACCACCTCATGAAGATCCTCACCG +AGCGCGGCTACAGCTTCACCACCACGGCCAAGCGGGAAATCGTGCATGACATCGAGGAGAAGCTGTGCTA +TGTTGCCCTGGACTTTGAGCAGGAGATGGCCATGGTGGCCTCCAACCCCCTGCTGGAGAAGAGCTAGGAG +CTGCCAGGTGGCCAAGTCATCTGCAATGAGCAGTTCCGCTGCCCTGAGGCACTCTTTCAGCCTTCCTTCC +TGGGCATGGAATCCTGTGGCATCCATGAAACTACCTTCAACTCCATCATGAAGTGTGACATGGACATCTG +CAAAGACCGGTACGTCAACAGAGTGCTGTCTGGCGGCACCACCGTGTACCCTGGCATCGCCGACAGGATG +CAGGAGATCACCGGCCTGGCTCCAAGCACGATGAAGATCAAGATCATTGCTCCTTCTGAGCGCAAATACT +CCATGTGGATTGGCAGCTCCATCCTGGCCTCGCTGTCTACCTCCCAGCAGATATGGATCAGCAAGCAGGA +GTATGACGAGTCCAGCCCCTCCATCGTCCACCACAAATGCTTCTAGGCGGACTGTTACTTAGTTGCGTTA +CACCCTCTCTTGACAAAACCTAACCTGAGCAGAAAACAAGATGAGATTGGCATGGCTTTATTTGCTTTTT +TGTTTTTTATGGTTTTTTTTTTGGCTTGACTCAGGATTTAAAAACTGGAACGGTGAAGGTGACAGCAGTT +GGATGGAGCAAGCATCCCCCGAAGTTCTACAATGTGGCCGAGACTTTGATTGTACATTGTTCTTTTTTTT +TTAATAATCATTCCAAATATTGTGAGATGCATTGTTACAGGAAGTCCCTTGCCCTCCTAAAAGCCACCCC +GCTTCTCTTTAAGGAGAATGGCCCAGTCCCCTCCCGAGTCTACACAGGAGGTGATAGCATTGCTTCATGT +AAATTATGTAATGCAAAACTTTTTTAATTTTCGCCTTAATACTTTTTAATTTTGCTTCATTTTGAATGAT +CAGCCTTCGTGGTGCCCCTTTTTTGTCCCCCAACTTGAGATGTATGAAGGCTTTTGGTCTCCCTAGGAGT +GGGTAGAGGCAGCCAGGGTTTACCTGTACACTGACTTGAGACCAGCTGAATAAAAGTGCACACCTTAAAA +ATAAAATAATAAAATAAAATAAAATGGGTTCTAAGAAGTACCATTTTGTATTCTCATGACATGCACCACA +CTTATACTTTATTTTCATGATTCCAGAACCAT + +>NG_002724.4 Homo sapiens actin, beta pseudogene 7 (ACTBP7) on chromosome 15 +TGCAGGTTTGATTCCAGACTATTGCAAAAAGCAAATATCACAAAAAAGCAAAGTCAGACAAATATTTTGG +TTTCCCAGTGCATATAAAACTTATGTTTCTGCTGAGACCGTGTCCACCCTGCGAGCACAGAGCCTTGCCC +TCGCCTCTCTGCCACCCGTCCACACCCGCCGCCAGCTCACCATGGATGATGATATCACCATGCTTGTCGT +CGACAATGGCTCTGGCATGTGCAAGGCCAGCTTTGCAGGTGACGATGCCCACCCCGGGCCATCTTCCCCT +TCATTGTGGGGCGCCCCAGACACCAGGGCGTGACGGTGGGCATGGGTCAGAAGGACTCCTATGTGGGCAA +CGAGGTCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATCAAGCAGGACATTGTCACCACCTGG +GACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGTGTGTGGCTGCCAAGGAGCACCCCA +TGCTGCTGACCAAGGTCCCCCTGAGCCCCAAGGCCAACCACAAGAAGATGACCCAGATCATGTTGGAGAT +CTTCGACAGGCCAGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACACCTCTGGCCTACCACTG +ACATCGTGATGGACTACGATGACGGGGTCACCCACACTGTGCCCATCTATGAAGAGTATGCCCTCCCCCA +TGCCATCCTGCGTGTGTGCCTGGCTGGTCAGGACCTGACTGACTACCTCATGAAGGTCCTCACCTAGCAC +AGCTACATCTTCACCGCCACAGCCAAGCGGGAAATTGTGCATGACATCAAGGAGAAGCTGTGCTATGTCA +CCCTGGACTTCGAGCAGGAGATGGCCATGGTGGCCTCCAGCTCCTCCCTGGAGATAGCTACAAGCTGCCC +GACGGCCAGGTCATCATCATCGGCAAAAGCAGTTCTGCTGCCCTGAGGCGCTCTTCCAGCCTTCCTTCCT +GGGCATGGAATCCCGCGGCATCCATGAAACTACCTTCAACTCCATCATGAAGTGTGATGTGGACATCCTC +AAAGACCCGTATGCCAACACAGTGCTATCTGGCGGCACCACCAGGTACCCTGGCATCGCCGATAGGATGC +AGAAGATCACCACCCTGGCGCCCAGCACAATGAAGATCAAGATCACTGCTCCTCCCAAGCGCAAGTACTC +CGTGTGGATCGGCAGCTCCATCCTGGCCTGGCTGTCCACCGTCCAGCAGATGTGGATCAGCAAGCAGGAA +TATGATGAGTCAGGCACCTCCATCATCCACCGCAGATGCTTCTAGGCGGACTGTGACTTAGTTGCGTTAC +ACCCTTTCTTGACAAAACCTAACTTGCGCAGAAAACAAGATGAGATTGGCATGACTTTGTTTTTTTTATT +TTGTTTTGTTTTGTTTGGCTCGACTCAGGATTTAAAAACTGGAATGGTGAAGGTGACAGCAGTTGGTTGG +AGTGAGCATCCCCCAGAGTTCTACAGTGTGGCCAGGGACTTTCATTGTACATTGTTCTTTTTTTAATAGT +CATTCCAAATATCGTGAGATGTGTTGTTACAGGAAGTACCTTGCCCTCCTACAAGCTACCCCACTTCTCT +CTAAGGAGAATGGCCCAGTCCTCTCCCGTGTCCACACAGGGGAGGTGATAGCATTGCTTTCATGTAAATT +ATGTAATACAACTTTTTTTAATCTTTGCCTTAATACTTCTTTATTTTGTTTTATTTTGAATGATCAGCTT +TCATGGCCCCACTTTTTTGTCCCCCAACTTGAGATGTATGAAGGCTTTTTGTCTCCCTGGGAGTTGGGAG +TGGGTGGAGGTAGCCAGGGCATACCTGTACACTGACTTGAGACCAGTTGAATAAAAGTGCATGCCTTATA +AAAAAAACACTTATGTTTCCACTATACTGTAGTCTATTCATTGTGCAGTAGCATATGTCTAAAAAAACAA +TGCACATACCTTCCTTAAAAAACACTTC + +>NG_003020.3 Homo sapiens actin, beta pseudogene 4 (ACTBP4) on chromosome 5 +TCAAACTCCTCTCCTACTTTCAGCCTGATGGCTTCCTTTTAGCTTTACAAAAGCAGTTGAGTTTTGGGCA +AGGCCTATTATCATTTAAACTGTAGCCTGGACCACCAAGACTGTGTCCACCCTGCAAGCACAGAGCCTCA +CCCTCACCACTCTGCCGCCCATCCACACCTGCCACCAGTTCACCATGGATAATGATATTGCTGTGCTTGT +CGTCGACAATGGCTCTGGCATGTGGAAGGTCTGCTTCACGGGCAACGATGCCCCCGGGCCGTCTTCCCCT +CCATAATGGGGCACCCGAGGCACCAGGGTGTGATGATGGGCATGGGTCGGAAGGACTTCTATGTGAGCAA +CAAGGCCCAGAGCAAGAGAGGTATCATGACCCTGAAGTACCCCATGGAGCATGGCATCATCACCAACTGG +GATGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCATGTGGCTCCCAAGGAGCACCGTA +TGCTGCTGACTGAGGTCCCCCTGAATCCAAGGCCAACCACAAGAAGATGACTCAGATCATGTTTGAGACC +TTCAACACCCCAGCCGTGTATATGGCCATCCAGGCCATGTTGTCCCTGTACACCTATGGCTGTACCACTG +GCATTGTGATGGACTCCAGCGATGGAGTCACCCACACAGTGCCCATCTACGAGGGTTACGCCCTCCCCCG +TGCCATCCTGTGTCTGGACGTGGCTGGCCGGGACCTTACTAACTACCTCATGAAGATCCTCACCGAGCAC +AGCTACAGCTTTACCACCATGGCCGAGCGGGAAATCGTGTGTGACATCAAGGAGAAGCTATACTATGTCA +CCCTGGACTTTGAGCAGGAGATGGCCACAGCGGCCTCCAGCTCCTCCCTGGAGAAGAGCTATGAGCTGTC +CGATGGCCAGGTCATCACCATTGGCAATGAGCTATCCTGCTGCCCTGAGGCGCTCTTCCAGCCTTCCTTC +CTGAGCATGGAATCCTGTGACATCCACAAAACTACCTTCAACTCCATCATGAAATGTGACATGGACATCC +GCAAAGACCTGTACACCAACACAGTGTTGTTTGGCGGCAACAACATGTACCCTGGCATTGCGAACAGGGT +GCAGAAGATCGTCACTCTGGTGTGGATGGGCAGCTCCATCCTGGCCTTGCTGTCCACCTTCCAGCAGATG +TGGGTCAGCAAGCCAGGAGTATGATGAGTCTGGCCTCTCCATCGTCCATCGCAAATGCTTCTAGGCGGAC +TGTTACTTAGTCGCGTTTCACCCTTTCTTGACAAAACCTAACTTGTGCAGAAAACAAGATGAGATTAGCA +TGGCTTTATTTGTTTTTTTGTTTTTGGTGGTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTAGAC +CCAGGATTTAAAAACTGGGACAGTGAAGGTGACAGCAGTCAGCTGGAGCAAGCATCCCCCAAAGTTCTGC +AATGTGGCCGAGGACTTTGATTGTACATTGTTCTTTTTTCTAATAGTCATTCCAAATATCGTGAAATGCA +TTGCTACAGGAAGTCCCTTGCCCCCCTGAAAGCCACCCCATTTCTCTCTAAGGAGAATGGCCCAGTCCTC +TCCCAAGTCCACACAGGGAAGGTGATAGCATTGCTTTCATGTAAATTATATAATGCAAAATTTTTTAATC +TTCACCTTAATACTTTTTTATTTTGTTTTACTTTGAATGATCAGCCTTTGTGGCCCCCCTTTTGTCCCCC +AACTTGAGATGTATGAAGGCTTTTGGTCACCCTTGGAGTGGGTAGAGGCAGCCAGGGCTTACCTGTACAC +TGACTTGAGACCAGTTGAATAAAATTGCACACCTTAAAAAAAAACAAAAAGCTGTAGCCTAAATGTCTTC +CGAAGTTAGCTTGGCCCCATACCCCAGGAATAATTAAGGGAAAGGCCAAAATGGGTTTTGGGTTAGCTTA + +>NR_004845.1 Homo sapiens actin beta pseudogene (LOC644936), non-coding RNA +CTCTGAACCCCAAGGACAACTGCGAGAAGATGACTTAGATCATGTTTGAGACCTTCACACCCCAGCCATA +TACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCTGGCCATAGCTGGCATTGTGATGGACTCCGGT +GATGGGGTCACCAACACTGTGCCCATCTATGAAGGGTACACCCCTCCCCCACACCATCCTGTGTCTGGAC +CTGACTGGCCGGAACCTGACTGACTACCTCATGAAGATCCTCACCCAGTGTGGCTACAGCTTCACCACCA +CAGTCATGCAGGAAATTGTGTGTGACATCAAGAAAAGGCTGTGCTACATCCCCCTGGACTTTGAGCAGGA +GATGGCCATGGTGGGCTCCAGCTCCTCCCTGGAGAAGAGCTACAAGCTGCCCAATGGCCAGGTCATCACC +ATTAGCAACAAGTGGTTCTGCTGCCCCGAGGCACTCTTCCAAACTTCCTTCGTGGGCATGGAATCCTGTG +GCATCCACGAAACTACCTTCAACTCCATCATGAAGTCGGATGTGGACATCTACAAAGACCTGTATGCCAA +CACAGTGCTGTCTGGCAGCACCACCATGTACCCTAGCATCACCAACAGGATGCAGAAGGAGATTACCGCC +CTGGCGCCCAGCGCAATGAAGATCAAGATCATTGCTCCTCCTGAGTGCAAGTACTCTGTGTGGATCAGAG +GCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACAGTGAGTCCAG +CCCCTCCATCGTCCACCGCAAATGCTTCTAGGTGGACTGTGACTTAGTTGCATTACACTCTTTCTTGACA +AAACCTAACTTGCACTAAAAACAAGATGAGATTGGTGTGACTTTGTTTTTTTTGTGGCTGGAGTTTTCTT +TTGGCTTGACTCAGGATTTAAAAACTGGAACGGTGAAGGTGACAGCAGTCGGTTGGAGCGAGCATCCCCC +AAAGTTCTACAATGTGGCCGAGGACTTTGATTGTACGTTGTTCTTTTTTTTGATAGTCATTCCAAATATC +ATGGGATGCATTGTTACAGGAAGTCCCTTGCCCTCCTAAAAGCCACCTCACTTCTCTCTAAGGAGAATGG +CCCAGTCCTCTCCGGAGTCCACACAGGGGAGGTGATAGCATTGCTTTCGTGTAAATTATGTAATACAATT +TTTAAAAAATCTTCACCTTAATACTTTTTTACTTTGTTTTATTTTGAATGATCAGCCTTCGTGGCTCCCC +ATTTCTTTTCCCCCAACTTAAGATGTATGAAGGCTTTTGGTCTCCCTGGAAGTGCGTGGATGCAGCCAGG +ACTTACCTGTACACTAACTTGAGACCAGTTGAATAAAAGTGTACACCTTAAAAAAAAAAAAAAAGAAAAA +AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA + diff --git a/debian/tests/actin_pseudo_small.fna b/debian/tests/actin_pseudo_small.fna new file mode 100644 index 0000000..e29472c --- /dev/null +++ b/debian/tests/actin_pseudo_small.fna @@ -0,0 +1,182 @@ +>NG_026958.2 Homo sapiens actin, beta pseudogene 12 (ACTBP12) on chromosome 1 +AAAGTTAGCCAAACTTCCGGATCAGGTCCAGAATGGGGACAAGGGTACAGCTCACAGAAAGAAGATGGTA +CAAAGAACAGCTACAGCTGATGACAAAAAGCTGGAGAAGAGCTACAAGCTGCCCGACGGCCAGGTCATCA +CCATCGGCAACGAACGGTTCCGGTGTCCGGAGGTGCTGTTCCAGTCTTCCTTCCTGGGCATGGAATCCTG +TGGCACCCACAAGACCACCTTCAACTGCATCATGAAGTGTGATGTGGACATCTTCAAAGACCTGTACGCC +AACACAGTGCTGTCCAGCGGCACCACCATGTACCCAGACATCACCAACAGGATGCAGAAGGCAATCACTG +CCCTGGCACCTAGCACCATGAAGATCAAGATCATTGCACCCCGAGAGCGAAAGTACTCGGTGTGGATCGG +CGGCTCCATCCTGACCTCACTGTCCACCTTCCAGCAGATGTGCACTAGCAAGCAGGAGTATGACAAGTTG +GGCCCCTCCACTGTTCACCACAAATGCTTCTAAATAGACTGTGAGCAGATGCATAGCTTTTGCTGCATGG +GTTAATTCAGAAGTATAAATTTGTCCCTGGCAAATGCATACATCTCATGCTAGCCTCACGAATCTGGAAT +AAGC + +>NG_024215.2 Homo sapiens actin beta pseudogene (LOC100418883) on chromosome 19 +AGCCAGGATGGTCTCGATCTCCTCACCTAGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACA +GGCATGAGCCTCTGTGCTCAGCCTGGCACGACACCTTCTACAATGAGCTGCATGTTTCTCCCAAGGAGCA +CCCGGTGCTGCTGACCGAGGCCCCCTTGAACCCCAAGGCCAGCCATGAGAAGATGACCCAGATCATGTCT +GAGACCTTCAACTCCCCATCCATGTATATAGCCATCCAGGCTCTGCTGTCCCTGCACGTGGCCTCCAGCT +TCTCCCTGAAGAAGAGATTCCAGCTGCCTGACAGCCAGGTCATCACCATCAGCAACGAGCGGTCCCCGCT +GTCCCATGGCACTTTTCCAGCCTTCCTTCCTGGACATGGAATCCTGTGGCATCCATGAAACTACCCTCAA +CTCCATCATGAAATGTGACATTGACATCTGCAAAGACCTGGATGCCAACCCAGTGCTGTCCAGTGACACC +ACCATGTACGCTGGTATTGCTGACAGGATGGAGGAGGAGATCACCACCATGGCTCCCAGCATGAAGAAGA +TCAACATCATTGCTCCTCCTGAGCACAAATATTCTGTATGGATCAGTGGCTCCATCTTGGTCTCGCTGTC +CCCCTTCCAGCAGATGTGGATCAGCAAGCAGGAATACGAGGAGTCCGGCCTCAGTATTGTCCACCCTACC +ACAAATACTTCTAGGCGGACGGTGACTTACATTATAACCTTTCTTGACAAAAACCTAATTTATGCAGAAA +ATAAGATTGGTTTTTTTTTTTTTTTTTTTTGGCTTAAGATTTAAAACCTGGAATGGTGAAGGTGACAGCA +GTTAGTTGGAGCGAAGAATCCCAAACGTTCTACAATG + +>NG_008793.3 Homo sapiens actin, beta pseudogene 6 (ACTBP6) on chromosome 8 +TAAATAAGCTAAATGCTGTTCTGGTGTCACCTAACAAAGCTTAAAACAAGACTAAAAAATTCAAACTGTT +GTCTGGCATTGAATCACAAATCAATAGCAGACCACCAAAACCTCATCCACCCAGGAAGCACAGACCCTTG +CCCTCACTGCTTTGCCACTGGTTCACATCTGCCCTGAGCTCACCATGGATGATGATACCTCTGCACTTGT +TGGCAACTGCTCTGGTATGTGCAAGGCCAGAATCCTTGTCAAAGATGCCCCCAGGCCTTCTTCCTTTCCA +TAGTGGGATGCCCATGGGACCAGAGTTTGATGATGGGCATAGGGCAGAAGGACTGCTATGTGAGGAATGA +GGTCCAGAACAAGTGAGGCATCCTGACCCTGAAGTACCCCACTGAGCACTGCATCATCACCAACTGGGAA +GACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGTTGTGGCTCCCAAGGAGCACCCTGTGCTATT +GACCAAGGTCCCCCTGAACCCCAAGGCCAACCATGAGAAGATAGCCCAGATCATGTTTGAGACCTTCAAC +ATCCCAGCTATGTACATGGCCATCTGGGTCATGCTGTCCGTCTAGCCTCTGGCCATACCACTGGCATTGT +GATGGATTCCAGTGGCAGGTTCACCTACAGTGTGCTCATCTCCGAGGACTATGCCCTTCTCTATGCCATC +CTGCATCCAGACCTGGCTTGCCGGGACCTATCTCATGAAGATCCTCCCCTAGTGAAGCTATAGCTTCACT +ATCATGGCAGAATGGGAAATTATGCATGACATCAAGGAGAAGCTGTGCTGGATCATCTTGGACTTCAATC +AGGAGCTGACAGCCCCTGCATCCTTCTTTTCCCTGCCAACAGCCAGGTAATTACCATCTGCAACAATCTC +TTCTTGATAGGTCCCGGCTCTCTTCCACACTTCTTTCCTGCATATGGAATCTTGTGGCATCCATGAAACT +ACTTCCAACTCCATCATGAAATGTGATGTGAACATGCACAAGAACCTGTACTCCAACACAGTGCTATCTG +GTGGCACCACCATGTACCCGAGCATCCAGGACAGGATGCAAAAGGAGATCACTGCCCTGGCCCCCAGCAC +AATAAGATCAAAATTATTGTGCCCCGTGAGCACACATTCTCTGTGTGAATCAGCGGCTTCATCCTGGCCT +CCCTGTTCACCTTCTAGTGGATTTGGATCAGCAAACAAGAATACTAAAAATCCATCCCCTCCATCGTCCA +CTACAAATGCTTCTAGGCAGACTGTTACTTAGTTGTATTACACCGTTTCTTGATAAAACCTAACTTGCAC +AGGAAACAAGATGAAATTGGCATGAACATATTTGTTTTTTGTCTGTTCACTTTGGGGTTTTTGGCCTGGT +GACTCAGGATTTAAAAATGAACAGTGACAGTGAGAGCGGTCAGTTGGAGTGAGCATCTCCCAAAATTCTA +CAATGTGGCAGAGGACTTCGATCATACATTGTTCTTTTTAAAAAAATGGTCATTCTACATATCATGAGAT +GCATTGTTGTAGAAAGTCCCTTGCCCTCCCAAAAGCCATCCCACTTCTCTCTAAGAAGAATGGCCTAGTC +ATCTCCCCATCCACACAGTGGAGGTGACAGCGTTGCTTTCTTGTAAATTATGTAATGCAACATTTTTTAA +ATCTTCACCTTCATACTTTTTTATTTTGTTTTATTTTGAATGATCAGCCATCATGGCCCTCTTTTTGTCC +CCCAGCTTGAAATGTATGAAGGTTTTTCATCTTCCTGGGAGTGGGTGGAGGTGTGGAGGCAGTCGATACT +GGTACTGACTTGAGACCACTTCAATAAAAGTGCACACCTTAAAAAAAGTCATCAGTAAGTAAAATTTGGA +AAATATAATCTATAATGAGGAGAAAAATCAACTGAAACTGAACTAAAAATTATACAAATAATAGAATTAG + +>NG_022284.2 Homo sapiens actin beta pseudogene (LOC100132223) on chromosome 3 +ATAGGAAGGAATATTTGCAAACTATGCCTCTGACAAAAGTCTACTATTCAGAATCTATAAGGAACTTAGA +CAAATCAACAAGCCAAGAACGACTGCATTCACCTCTGAGACCGCATCTGCCCCATAAGCACAGAGTCTTG +CCCTCGCCGCTCTGCCACGGGTCCACACCCACTGCCAGCTCATCATGGATAATGATATCGCCACGCTCGT +CATGGACAATGGCTCTCCCATGTGCAAGGCCAGCTTAGCAGGCGACGATGCCCCTCCATCGTGAGGCACC +CATGGCACCAGGGCATGATCGTGGGCATGGGTCAGAAGAAGTCCTACGTGGACAATGAGGCCCAGGGCAA +GAGAAGCATCCTGACCCTGAAATACCCTATCGAGCATGGCATTGTCACCAATGGAGAAGATCTGGCACCA +CACCTTCTTCAACGAGCTGCATGTGGCTCCTCAGGAGCACCCTGTGCTGCTGACTGGGGCCCCCCTAAAC +CCCAAAGCCAACCGTGGGATGACCCAGATCATGTTTGAGACCTTCTACACCCCAGCCATGTAGGTGGCCA +TTCAGGCTGTGCTTTCCCTGTAAGCCTCTGGCTGTACCACTGGCACCGTGATGGACTCTGGCAGGGTCAC +CCACACTGTGCCCATCTACAAGGGGCACGCCTTCCCTGGTGCCATCCTGCATCTGGACCCGGCTGACTAC +CGCATGAAGAGCCCCGGGAAGTGCAGCTACAGCTTCACCACCACCGCTGAAGAGAGCGTGAGACATCAAG +GAGAAGCTGTGCTACCTCACCCTGGACTTCCAGCTCCTCCCTGGTCACTGTGGCCTCCAGCTCCTCCCTG +GAGAAGAGCTACAAGCTGCCTGAAGCCCAAGTCGGCACCATCAGCAACAAGCTGGTCCTCTGCCTCAAGG +CTCTTTTCCAGCCTTCTTTCCTGGGCATGAAATCCTGTGGCATCCACGAAACTACCTTCAACTCCATCAT +GAAGTGTGACATGGACATTTGCAAAGACCTCTACACCAATGCAGTACTGTCCAGTGGCACCACTGTGTAC +CCTGGCATCCCCCACAGGATGCAGAAGGAGATCACCACCCTGGCTCCCAGCACAATGCAGATAAAGATCA +TTGCTCCTCCTGAGCGCAGATACTCTGTGTGGGTCCAGTGGCTCCATCCTGGCCTGGCTGCCAGGCTTCC +AGCAGATGTGGATCAGCAAGCAGCAGTACCACAAGTCCCACCCCTCCATTGTCCACCACAGATGCCTCTA +GGAGGACTGTCGCTTAGTTTTCTTAGTTTCATTACACTCTTTCTTGACAAAAACCAAACTGGCACAGAAA +ACAAGATGACATTGGCATGCCTTAATTTGTTTTTGTTTTTTGTTTGTTTTCGTTTTTGTTTTCGGCTTGA +CTCAGGATTTAAAAATTGGACCATGACAGTGTCAGCAATGGGTTGGAGCCAGCATCGC + +>NG_021768.2 Homo sapiens actin beta pseudogene (LOC390029) on chromosome 11 +ACACCCGCCGCCCTCCACACCCGCCGCCCTCCACACCCGCCGCCCGTCCACACCCGCCGCCCGTCCACAC +CCGCCGCCCTCCACACCCGCCGCCCTCCACACCCGCCGCCCGTCCACACCCGCCGCCCGTCCACACCCGC +CGCCCTCCACACCCGCCGCCCTCCACACCTGCCGTCTGTCCACACCCACCCAGCTCACCATGGATGATAA +TATCACCTTGCTTGTCATAGACAACACCTCTGGCATGTGCAAGGCCAGCTTCACCGACGACGATGCCCCC +TGGGCCGTCTTCCCCTCCATCGTGGGGTGCCCCAGACACCAGGGCATGACGGTGGGCATGGGTCAGAAGG +ACTTCTATGTGGGTGGCGAGGCCCAGAGCGAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAGCATGG +CATCATCAGCAGCTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGGGAGCAC +CCGGTGCTGCTGACCGAGGCCTCCCGAGCCCCAAAGCCAATAGAAAGAAGATGACCCAGATCATGTTTGA +GACCTTCAACACCTCGGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCAAGTACACTCCTGGCCATACC +ACTGGCATCATGATGAACTCCAGCGACGGGGTCACCTGCACAGTGTCCATCTATGAGGGCTACACCCTCC +CCCATGCCATCCTGTGTCTGGACCCGGCTGGCCGGGACCAGACTGACTACCTCACAAAGATCTCACTGCG +CATGGCTACGGCTTCACCACCACGGCCGAGCGGGCGATCACGTGTGACATTAAGGAGAAGCTGTGCTATG +TTGCCCTGGACTTCAAGCAGGAGGTGGCCACGGCGACCACCAGCTCCTCCCTGGAGAAGAGCTATGAGCT +GCCTGACAGCCAGGTCATCCCCACTGGCAACGAACGGTTCCGCTGCCCCGAGGAGCCCTTCCCGCCTTCC +TTCCGGGGTGAGTGGAGACCCCCTCCTGGCCCTGCCCACAGGAAGGTCACCCTCGGGGCCATGCTGTGGA +AGCTGAGGCTGGCCCTCATTTCCCCCTCAGGCATGAAATCCTGTGGCATCCACGAAACTATCTTCAACTC +CATCATGAAGTGTGACATGGACATCCTCGAAGACCAGTACACCAACACAGTGCTGTCTGGAGGGACCAGC +ATGCACCCCAGCATCACCCACAGGGTGCAGAAAGAGATCACCGCCCTGGCGCCTGGCACGATGAAGATCA +ACGTCATTGCTCCTCCCGAGCGCAAATACTCTGCGTGGATCAGCGGCTCCATCCCGGCCTCGCCATCCAC +CTTCCAGCAGATGTGGATCAGCAAGCAGGCGTATGACGAGCCTGGCCCCTCCATCCTCCACCGCAAATGC +TTCTAGGCAGACTGGACTTAGCTGTGGTACACTCTTTCTTGACAAAACTTTGTGCAGAAAACAAGATGAG +ATGGGCGTGGCTTTTTTTTGTTTTTTGTTTGTTTTTGATTTTTTTGTTTTTTTTGGCTTGACTCAGGAAT +TAAAAACTGGAACGGTGAAGGTGACAGCGGTCGGTTGGAGGGAGCATCCCCCAAAGTTCACAATGTGGCC +GAGGACTTTGATTATACATTGATCTTTTTTTTAAATAGTCATTCCAAATGTCGTGAGATGCAATGTCACA +GGAAGTCTCTTGCCCTCCTA + +>NG_005779.3 Homo sapiens actin beta pseudogene (LOC402221) on chromosome 5 +TTGGAAAATTTTCTAGACATGCTAAGCTAAGTGTATTAGTCCATTTTGACACTGCTGATAAAGACATACC +TGAGACTGGGAAGAAAAATAGGGTTAATGGACAGCCGAGACCACGTCCGCCCCGCAAGCACAGAGCGTCG +CCCTCCCCGCTCTGCCGGGCATCCATGCCCGCAGCTAGCTCACCATGGATGATGATATCAGCACGCTCCT +CATCAACAAGGGCTCTGGCATGTGCAAGGCCGGCTTCACAGGTGACAATGCCCCCGGGCCATCTTCCCCT +CTGTCATGGGTGCCAGGGAGTGATGGTGGGCATGGGTCAAAAGGACTCCTATGTGGGTGATGAGGCCCAG +AGCAAGAGAGGCATCCTGACCCTGAAGTACCCTGTGGAGCACGGCACCAACTGGGACGACATGGAGAAGA +TCTGGCACCACACCTTCTACAACAAGCTGTGTATGACTCCTGAGGAGCACCCCATGCTGTTGACCCAGGC +CCCCCTGAACCCCAAGGCCAATCATAAGATGACCCAGATCACGTTCGAGACCTTCAGCAATACCCCAGCC +ATATACATGGCCATCCAGGCTGTGGTGCTGTCCCTGTACGCCTCTGGCCTTACCACTGGCATTGTGATGG +ACTCTGGTAACGGGGTCACCCACACTGCCCATCTACGAGTGGTATGCCCTCCCCCACGCCATCCTGCGTC +TGGACCTGGCTGGCCTGGACCTGACTGACTACCTCATGAAGATCCTCACCGAGTGGGCGCTACAGCTTCA +CCACCACGGCTGAGCAGGAAATCATGCATGACATCAAGGAGAAGCTGTGCTATGTCACCCTGGACTTTGA +GCAGGAGATGGCCACAGTGGCCTCCAGCTCCTCCCTGGAGAAGATCTACGAGCTGCCCGACCTCCCGATA +GCCAGGTCATCACCATCAGCAATGAGAGGTTCCACAGCCCCCAGGCCCTCTTCCAGCCTTCCTTCCTGGG +CATGGAATCCTGTGGCATCCTACTGTCAACTCCATCATGAAGTGTGACATGGACATCCGCAAAGACCTGC +ATGCCAACACAGGGCTGTCTGGCGGCACCACCATGTACCCTGGCATGGCAGGACAGGATGCAGAAGGAGA +TCACCACCCTGGTGCCGTTGCTCCTCTGGAGAGTTAGTACTCCGTGTGGATCAGCGACTCCATCCTGGCC +TCGCTTTCCACCTTCCAGCAGATGTGGATCAGCAAGGAATACGACGAGCCTGACCCCTTCCTCATCCACC +GCAAGTGTTCTAGGCGGATTGTAACTTAGTTGCATTATACCCTTTCTTGACAAAACCTAACTTGCGCAGA +AAACAAGATGAGATTGGCATGGCTTTATTTGTTTTTTTGTTTTGTTTTGTTTTTGGCTTGACTCGGGATT +TAAAAACTGGAATAGTGAAGGTGACAGCAGTTGGCTGGAGGAAGCATCCCCCAAAGTTCTGCAATGTGGC +CGAGGACTTTGATTGTACATTGTACATTTTTAAATAGTCATCCCAAATATCATGAGATGCATTGTTACAG +GAAGTCCGTTGCCCTCTTAAAAGCCACCCCACTACTCTCTAAGGAGAA + +>NG_022596.2 Homo sapiens actin, beta pseudogene 1 (ACTBP1) on chromosome X +TTTGGAGTTTAGACACAACTCAGCATTACTATTAAAATAGAGATCCTAAGAGTGACAGAAGAAATTCTTT +GTAGCAATAAGATAACAACTCCAGACTGTGGAGACTGCATCTTCCTGGCGGGCACAGAGCCTCACCCTCC +CCACTCCATCACCAGTCCACACCCACTGCCAGATCACCATGAATGATGATATCACTGCTCTCGTCTTCAA +CAAAGGCTCTGGCATGTGCAAGGCTGCCTTCATGGGCGATGATGCCCCCCAGTTGTCTTCCCCTCCATCA +TGTGGTGCCCGTGGCACCAGGGCGTGATGCTGGGCATGGGTCAGAAGGACTCCTACATGAGCGATGAGGT +CCAGAGCAAGAGAGGCATCCTGACCCCACCCTGAAATGCCCCATGGAGCACAGCATTGTCACCAAATGGG +ATGACATGGAGATCTGGCACCATAACTTTTACAACAAGCTATGTGCGGCTCCCGAGGAGCACCCCATGCT +GCTGACCGAGGCCCCCCTGAGCCCCAAGGCCAACCATGAGAAGATGACCCAGATCATGTTTGAGACTTTC +AATGCCCCAGCCATGTACTTGACCATCCAAGCTGGTATGCCTCTGGCAGTACCACTGGCATCGTGATGGA +CTCTAGCGATGGGATCACCCACACTATGCCCATCTATGAGGGGTACACCCTCCCCCATGCCATCTTGCCT +CTGGACCTGGCTGGCCAGGACCTGACTGACTACTTCATGAAGATCCTCAAGGAGGGCGGCTACAGCTTCA +CCACCACTGCTGAGCGGGAAATCATGCTTGACATCAAGGAGAAGCTGTGCTACATCACCCTGGACTTCGA +GCAGGAGATGGCCACTGCAGCCTCTAGCTCCTCCCTGGAGAAGAGCTAGGAGCTGCTCAACGGCCAGGTC +ATCACCATCAGCAACCAGTGGTTCCACTGCCCCAGTACCTCTTCCAGCCTTCCTTCCTGGGCATGGAATC +CTATGGCATCCACGAAACTACCTTCACCTCCATCATGAAGTGTGATGTGGACATCTGCAAAGACCTGTAC +GCCAATACAGTGCTGTCTGGCGGCACTACCATGTACCCTGGCATTGCCGACAGGATGCAGAAGGAGATCA +CTGTCCTGACTTCCAGCACAGTAAAGATCAAGATCATTGCTCCTCCTGTGCATAAATACTCTGTGTGTTT +CGATGGCTCCATCCTGGCCTCCCTGTCCACCTCCCAGCAGATGTGGATCAGCAAGCAAAAATACCAAGAG +GCCGGCCCCTTCATCACCCACAGCAAGTGCTTCTAGGCGGACTGTTACTTAGTTGCATTACACCCATTCT +TGACAAAAACCCAACTTGCCAGAAAACAAGATGAGATTGGTGTGGCCTTACTATTATTATTATTATTATT +ATTATTTGTTGTTGTTGTTGTTGTTGTTTAGCTTGACTCAGGATTTGAAAACTGGAAAGGTGGAGGCGAC +AGCAGTCAGTTGGAGTGAGCA + +>NG_007577.3 Homo sapiens actin, beta pseudogene 11 (ACTBP11) on chromosome 1 +GAACATCACACACTGAGGCCTTTCCAGGGTGGGGGTGAAGGAGAGGGAGAGCATTAGGACAAATACCTAA +TGCATGCGGGGCTTAAAACCTAGATGATGGACTGCCAAGACCATGTCTGCCAGGTGAGCACAGAGCCTTG +CCCTCGCTGCTCTGCAGCCTGTCCACACCCGCCGCCAGCTCACCATGGATGATGATATCGCGGCGCTCGT +CATTGACAACAGCTCCGGCATGTGCAAGGCTGGCTTCACAGGGGATGATGACCCCTGGGCCATCTTCCCT +TCCATGGTGGGGCGCCCCAGGCACCAGGGCGTGATGGTGAGCATGGGTCAGAAGGATTCCTATGTGGGTG +ACGAGGCCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTG +GGACGACATGGAGAAGATCTGGCACCACATCTTCCACAATGAGCTGCGTGTGGCTCCCAAGCAGCACCCC +GTGCTGCTGACCAAGGCCCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCACATCATGTTTGAGAC +CTTTAACACGGCAGCCATGTACGTGGCCATCCAGGCTCTGCTGTCCCTGTACGCCTCTGGCCGTACCACT +GGCATCATGATGGACTCTGGTGACGAGGTCACCCACACTGTGCCCTTCTACGGGGGGTATGCCCTCCCCC +ACGCCATCCTGTGTCTGGACCTGGCTGGCCGGGACCTAACTGACTACCTCATGAAGATCCTCACGGAGCG +CGGCTACAGCTTCACCACTACGGCTGAGCAGGAAATCGTGCATGACATCAAGGAGAAGCCGTGTTACATC +GCCCTGGACTTCGAGCAGGAGATGGCCACGGGGGCCTCCAGCTCCTCCCTGGAGAAGAGCTACAAGCTGC +CTGATAGCCAGGTCATCATCAAAGCAGTTCTGCTGCTCTGAGGCACTCTTCCAGCCTTCCTTCCTGGGCA +TGTAATCATGTGGCATCCATGAAACTACCTTCAACTCCATCACGAAGTGTGACGTGGACATCTGCAAAGA +CCTGTACTCCAACACAGTGCTGTCTGGCAGCACCACCGTGTACTCTGGCCTGCATAGCGGACAGGATGCA +GAAGGAGATCACCGCCCTGGCCCCCAGCACGATGAAGATCAAGATCATTGCTCCTCCCGAGCGCAAGTAC +TCCGTGTGGATCGGCACCTCTATCCTGGCCTCTCTGTCCACCTTCCAGCAGATATGGATCAGCAAGCAGG +AGGAGTATGACAAGTCTGGCCCCTCCACTGTCCACTGCGAATGCTTCTAGGCGGACTGTGACTTAGTTAC +ATTACACCCTTTCTTGTCAAAACCTAACTTGAGCAGAAAACAATATGAGATTCGCATGGCTTTATTTGTT +TTTGTTTTTTTTTTTTTTGGCTTGACTCAGGATTTAAAAACTGGAATGGTGAAGGTGACAGCAGTCTGTT +GGAGCGAGCATCCCCCAGAGTTCTACAATGTGGCCGAGGACATTGATTGTACGTTGTTCTTTTTTTAAAA +AATAGTCATTCCAAATATCATGAGATGCATTGTTACAGGAAGTTCCTTGCCCTCCTAAAAGCCGCCCCAC +TTCTCTCTAAGGAGAATGGCCCAGTCCTCTCCCACATCCACACAGAGGAGGTGATAGCATTGCTCTCATG +TAAATTATGTAATGCCAATTTTTAAAAATCTTCACCTTAACACTTTTTTATTTTGTTTTATTTTGAATGA diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..714f890 --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,3 @@ +Tests: test_example +Depends: @ +Restrictions: allow-stderr diff --git a/debian/tests/test_example b/debian/tests/test_example new file mode 100755 index 0000000..113fedb --- /dev/null +++ b/debian/tests/test_example @@ -0,0 +1,18 @@ +#!/bin/sh +# autopkgtest check: Run some Dialign test cases +# Author: Sascha Steinbiss <[email protected]> +set -e + +ORIGDIR=$(pwd) +DATADIR=$ORIGDIR/debian/tests/ +WORKDIR=$(mktemp -d) + +trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM +cd $WORKDIR + +dialign-tx -a2000 -d3 -D /usr/share/dialign-tx $DATADIR/actin_pseudo_small.fna +dialign-tx -a2000 /usr/share/dialign-tx $DATADIR/actin.faa +dialign-tx -a2000 /usr/share/dialign-tx $DATADIR/actin_2.faa +for f in /usr/share/dialign-tx/BB1*.tfa /usr/share/dialign-tx/*.fasta; do + dialign-tx /usr/share/dialign-tx $f; +done -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/dialign-t.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
