This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository pbseqlib.
commit 727332e0b79f4ec5ecfb04ee686b64505958cd67 Author: Afif Elghraoui <[email protected]> Date: Sat Dec 17 23:07:26 2016 -0800 Build with pbbam Some hints were taken from PacBio's pitchfork: https://github.com/PacificBiosciences/pitchfork/blob/master/ports/pacbio/blasr_libcpp/Makefile This will likely be needed to take advantage of pbbam in pbseqlib's reverse-dependencies. --- debian/control | 7 +++++-- debian/rules | 3 ++- 2 files changed, 7 insertions(+), 3 deletions(-) diff --git a/debian/control b/debian/control index d620da3..d397083 100644 --- a/debian/control +++ b/debian/control @@ -9,7 +9,7 @@ Build-Depends: zlib1g-dev, libhdf5-dev, libboost-dev, -# libpbbam-dev, + libpbbam-dev, libhts-dev, # Test-Depends: libgtest-dev, @@ -68,7 +68,8 @@ Architecture: any Multi-Arch: same Depends: ${shlibs:Depends}, - ${misc:Depends} + ${misc:Depends}, + libpbbam, Description: tools for handling PacBio sequences Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains @@ -98,6 +99,7 @@ Depends: ${shlibs:Depends}, ${misc:Depends}, libpbdata (= ${binary:Version}), + libpbbam, Description: tools for handling PacBio hdf5 files Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains @@ -128,6 +130,7 @@ Depends: ${misc:Depends}, libpbdata (= ${binary:Version}), libpbihdf (= ${binary:Version}), + libpbbam, Description: tools for aligning PacBio reads to target sequences Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains diff --git a/debian/rules b/debian/rules index dec70d3..04ac123 100755 --- a/debian/rules +++ b/debian/rules @@ -3,7 +3,6 @@ #DH_VERBOSE = 1 include /usr/share/dpkg/default.mk -export NOPBBAM = 1 export HDF5_INC = /usr/include/hdf5/serial export HDF5_LIB = /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial export GTEST_INC = /usr/include @@ -12,6 +11,8 @@ export GTEST_SRCDIR = /usr/src/gtest export DEB_CFLAGS_MAINT_APPEND=-O3 export DEB_CXXFLAGS_MAINT_APPEND=-O3 +export LDLIBS += -lpbbam + %: dh $@ --parallel -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbseqlib.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
