This is an automated email from the git hooks/post-receive script. vdanjean pushed a commit to branch master in repository picard-tools.
commit 069dca85851a261d33053dde558fa08f3974aef3 Author: Vincent Danjean <[email protected]> Date: Sun Dec 18 18:49:15 2016 +0100 Fix parameter type for one test --- debian/changelog | 1 + debian/patches/30-tests-fix-dataprovider.patch | 8 ++++---- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/debian/changelog b/debian/changelog index e48b6ff..025bcf1 100644 --- a/debian/changelog +++ b/debian/changelog @@ -8,6 +8,7 @@ picard-tools (2.8.0+dfsg-1) UNRELEASED; urgency=medium [ Vincent Danjean ] * Really force C locale for tests + * Fix parameter type for one test -- Andreas Tille <[email protected]> Sun, 11 Dec 2016 08:52:38 +0100 diff --git a/debian/patches/30-tests-fix-dataprovider.patch b/debian/patches/30-tests-fix-dataprovider.patch index d9100ae..f81a76c 100644 --- a/debian/patches/30-tests-fix-dataprovider.patch +++ b/debian/patches/30-tests-fix-dataprovider.patch @@ -2,7 +2,7 @@ Description: fix data provider requirements Author: Sascha Steinbiss <[email protected]> --- a/src/test/java/picard/analysis/directed/CollectHsMetricsTest.java +++ b/src/test/java/picard/analysis/directed/CollectHsMetricsTest.java -@@ -21,22 +21,22 @@ public class CollectHsMetricsTest extend +@@ -21,22 +21,22 @@ @DataProvider(name = "collectHsMetricsDataProvider") public Object[][] targetedIntervalDataProvider() { @@ -20,13 +20,13 @@ Author: Sascha Steinbiss <[email protected]> + {TEST_DIR.getAbsolutePath() + "/lowbaseq.sam", intervals, 1, 10, true, 2, 200, 0.5, 0.0, 0.50, 0.0, 1000}, // test that read 2 (with mapping quality 1) is filtered out with minimum mapping quality 2 - {TEST_DIR + "/lowmapq.sam", intervals, 2, 0, true, 2, 202, 0, 0.0, 0.505, 0.0, 1000}, -+ {TEST_DIR.getAbsolutePath() + "/lowmapq.sam", intervals, 2, 0, true, 2, 202, 0, 0.0, 0.505, 0.0, 1000}, ++ {TEST_DIR.getAbsolutePath() + "/lowmapq.sam", intervals, 2, 0, true, 2, 202, 0.0, 0.0, 0.505, 0.0, 1000}, // test that we clip overlapping bases - {TEST_DIR + "/overlapping.sam", intervals, 0, 0, true, 2, 202, 0, 0.5, 0.505, 0.505, 1000}, -+ {TEST_DIR.getAbsolutePath() + "/overlapping.sam", intervals, 0, 0, true, 2, 202, 0, 0.5, 0.505, 0.505, 1000}, ++ {TEST_DIR.getAbsolutePath() + "/overlapping.sam", intervals, 0, 0, true, 2, 202, 0.0, 0.5, 0.505, 0.505, 1000}, // test that we do not clip overlapping bases - {TEST_DIR + "/overlapping.sam", intervals, 0, 0, false, 2, 202, 0, 0.0, 0.505, 0.505, 1000}, -+ {TEST_DIR.getAbsolutePath() + "/overlapping.sam", intervals, 0, 0, false, 2, 202, 0, 0.0, 0.505, 0.505, 1000}, ++ {TEST_DIR.getAbsolutePath() + "/overlapping.sam", intervals, 0, 0, false, 2, 202, 0.0, 0.0, 0.505, 0.505, 1000}, // A read 10 base pairs long. two intervals: one maps identically to the read, other does not overlap at all - {TEST_DIR + "/single-short-read.sam", twoSmallIntervals, 20, 20, true, 1, 10, 0.0, 0.0, 0.5, 0.0, 1000 } + {TEST_DIR.getAbsolutePath() + "/single-short-read.sam", twoSmallIntervals, 20, 20, true, 1, 10, 0.0, 0.0, 0.5, 0.0, 1000 } -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/picard-tools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
