This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository blasr.
commit 456172a461ea2188a5df9b1b9ed9b08f757522e9 Author: Afif Elghraoui <[email protected]> Date: Tue Oct 25 00:49:01 2016 -0700 Build with pbbam This enhances the functionality of blasr (enabling the --sam option) and is required now that pbseqlib has been built with pbbam enabled. Closes: #848751, #848541 --- debian/TODO | 2 -- debian/control | 6 ++++-- debian/rules | 2 +- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/debian/TODO b/debian/TODO index 7c4d906..04d3e21 100644 --- a/debian/TODO +++ b/debian/TODO @@ -3,5 +3,3 @@ * Update manpages * build bax2bam and bam2bax - -* Look into building with pbbam diff --git a/debian/control b/debian/control index 902cf8d..3aa10bd 100644 --- a/debian/control +++ b/debian/control @@ -8,7 +8,8 @@ Build-Depends: python, libhdf5-dev, zlib1g-dev, - libpbseq-dev, + libpbseq-dev (>= 0~20160912), + libpbbam-dev, Standards-Version: 3.9.8 Homepage: https://github.com/PacificBiosciences/blasr Vcs-Git: https://anonscm.debian.org/git/debian-med/blasr.git @@ -19,7 +20,8 @@ Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, - libpbseq, + libpbseq (>= 0~20160912), + libpbbam, Description: mapping single-molecule sequencing reads Basic local alignment with successive refinement (BLASR) is a method for mapping single-molecule sequencing reads against a reference genome. diff --git a/debian/rules b/debian/rules index e3961ee..eb33f93 100755 --- a/debian/rules +++ b/debian/rules @@ -15,7 +15,7 @@ export LIBPBIHDF_INC=$(PBSEQ_BASE)/hdf dh $@ --parallel override_dh_auto_configure: - ./configure.py --no-pbbam --shared + ./configure.py --shared # Tests require data not available in the source distribution override_dh_auto_test: ; -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/blasr.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
