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commit caa8213bc9e4f053a8678609ff5c415da1fa83d3 Author: Sascha Steinbiss <[email protected]> Date: Fri Jan 6 10:57:25 2017 +0100 fix spelling issues --- debian/changelog | 1 + debian/patches/series | 1 + debian/patches/spelling.patch | 117 ++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 119 insertions(+) diff --git a/debian/changelog b/debian/changelog index 50d7058..f0ac9a5 100644 --- a/debian/changelog +++ b/debian/changelog @@ -2,6 +2,7 @@ genometools (1.5.9+ds-4) unstable; urgency=medium * Switch asciidoc dependency to asciidoc-base. Closes: #850341 + * Fix minor spelling issues in help output. -- Sascha Steinbiss <[email protected]> Fri, 06 Jan 2017 10:13:08 +0100 diff --git a/debian/patches/series b/debian/patches/series index 62b5eaa..39567bb 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -8,3 +8,4 @@ split-manuals use-mx32 gtdoc-traverse-sorted ignore-m32-m64.patch +spelling.patch diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch new file mode 100644 index 0000000..531f95f --- /dev/null +++ b/debian/patches/spelling.patch @@ -0,0 +1,117 @@ +Description: fix minor spelling issues +Author: Sascha Steinbiss <[email protected]> +--- a/src/extended/condenseq_creator.c ++++ b/src/extended/condenseq_creator.c +@@ -1723,7 +1723,7 @@ + if (!had_err) { + if (gt_showtime_enabled()) + gt_timer_show_progress(timer, "write data, alphabet", stderr); +- gt_log_log(GT_WU " kmer positons in final kmer_db", ++ gt_log_log(GT_WU " kmer positions in final kmer_db", + gt_kmer_database_get_kmer_count(condenseq_creator->kmer_db)); + gt_log_log(GT_WU " xdrop calls.", ces_c_xdrops); + gt_log_log(GT_WU " uniques", condenseq_creator->ces->udb_nelems); +--- a/src/extended/intset.h ++++ b/src/extended/intset.h +@@ -74,7 +74,7 @@ + size_t gt_intset_best_memory_size(GtUword maxelement, GtUword num_of_elems); + + /* Write <intset> to file <fp>. Fails with exit on IO-error. Returns NULL if +- data error occures and writes it to <err>, <intset> will be deleted at that ++ data error occurs and writes it to <err>, <intset> will be deleted at that + point. */ + GtIntset* gt_intset_write(GtIntset *intset, FILE *fp, GtError *err); + +--- a/src/extended/wtree_encseq.c ++++ b/src/extended/wtree_encseq.c +@@ -84,7 +84,7 @@ + + if (bit == 0) { + pos = gt_compressed_bitsequence_rank_0(we->c_bits, node_start + pos) - +- zero_rank_prefix - 1; /*convert count (rank) to positon */ ++ zero_rank_prefix - 1; /*convert count (rank) to position */ + alpha_end = middle; + node_start += we->parent_instance.members->length; + node_size = left_child_size; +@@ -96,7 +96,7 @@ + one_rank_prefix = + gt_compressed_bitsequence_rank_1(we->c_bits, node_start - 1); + pos = gt_compressed_bitsequence_rank_1(we->c_bits, node_start + pos) - +- one_rank_prefix - 1; /*convert count (rank) to positon */ ++ one_rank_prefix - 1; /*convert count (rank) to position */ + alpha_start = middle + 1; + node_size = + gt_compressed_bitsequence_rank_1(we->c_bits, +--- a/src/match/seqabstract.h ++++ b/src/match/seqabstract.h +@@ -71,7 +71,7 @@ + /* return the length of <sa> */ + GtUword gt_seqabstract_length(const GtSeqabstract *sa); + +-/* return character at positon <idx> (relative to <startpos>) of <sa> */ ++/* return character at position <idx> (relative to <startpos>) of <sa> */ + GtUchar gt_seqabstract_encoded_char(const GtSeqabstract *sa, + GtUword idx); + +--- a/src/match/sfx-diffcov.c ++++ b/src/match/sfx-diffcov.c +@@ -491,7 +491,7 @@ + return countderived; + } + +-static int dc_compareCodeatpositon(const void *vala,const void *valb) ++static int dc_compareCodeatposition(const void *vala,const void *valb) + { + const Codeatposition *a = (const Codeatposition *) vala; + const Codeatposition *b = (const Codeatposition *) valb; +@@ -516,7 +516,7 @@ + return 0; + } + +-static void dc_validate_samplepositons(const GtDifferencecover *dcov) ++static void dc_validate_samplepositions(const GtDifferencecover *dcov) + { + GtUword pos; + unsigned int modvalue; +@@ -1268,7 +1268,7 @@ + gt_assert(codelist.spaceCodeatposition != NULL); + qsort(codelist.spaceCodeatposition, + (size_t) codelist.nextfreeCodeatposition, +- sizeof (*codelist.spaceCodeatposition),dc_compareCodeatpositon); ++ sizeof (*codelist.spaceCodeatposition),dc_compareCodeatposition); + } + if (dcov->effectivesamplesize > 0) + { +@@ -1690,7 +1690,7 @@ + printf("v=%u (size=%u)\n",dcov->vparam,dcov->size); + if (withcheck) + { +- dc_validate_samplepositons(dcov); ++ dc_validate_samplepositions(dcov); + } + dc_differencecover_sortsample(dcov,NULL,NULL,NULL,withcheck); + gt_differencecover_delete(dcov); +--- a/src/tools/gt_kmer_database.c ++++ b/src/tools/gt_kmer_database.c +@@ -126,8 +126,8 @@ + gt_option_exclude(option_mean_cutoff, option); + + /* -disable_prune */ +- option = gt_option_new_bool("disable_prune", "disables the removel of kmers, " +- "which occure more often than the cutoff.", ++ option = gt_option_new_bool("disable_prune", "disables the removal of kmers " ++ "which occur more often than the cutoff.", + &arguments->prune, false); + gt_option_parser_add_option(op, option); + gt_option_imply(option, option_use_cutoff); +--- a/src/tools/gt_show_seedext.c ++++ b/src/tools/gt_show_seedext.c +@@ -119,7 +119,7 @@ + + /* -sort */ + op_sortmatches = gt_option_new_bool("sort","sort matches in ascending order " +- "of their end positon on the " ++ "of their end position on the " + "query", + &arguments->sortmatches,false); + gt_option_parser_add_option(op, op_sortmatches); -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/genometools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
