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tille pushed a commit to branch master
in repository tvc.
commit 6c8dc1825b6f4530789c1c846ccb561d63e4db7a
Merge: 1961741 c7f1a0f
Author: Andreas Tille <ti...@debian.org>
Date: Fri Jan 13 13:31:43 2017 +0100
Merge tag 'upstream/5.0.3+dfsg1'
Upstream version 5.0.3+dfsg1
external/vcflib/BedReader.h | 123 --
external/vcflib/LICENSE | 19 -
external/vcflib/README | 29 -
external/vcflib/Variant.cpp | 2004 --------------------
external/vcflib/Variant.h | 480 -----
external/vcflib/convert.h | 22 -
external/vcflib/join.h | 36 -
external/vcflib/multichoose/Makefile | 17 -
external/vcflib/multichoose/README | 40 -
external/vcflib/multichoose/multichoose.c | 53 -
external/vcflib/multichoose/multichoose.cpp | 66 -
external/vcflib/multichoose/multichoose.h | 79 -
external/vcflib/multichoose/multichoose.py | 55 -
external/vcflib/multichoose/multipermute.cpp | 66 -
external/vcflib/multichoose/multipermute.h | 132 --
external/vcflib/multichoose/multipermute.py | 98 -
.../vcflib/smithwaterman/BandedSmithWaterman.cpp | 670 -------
.../vcflib/smithwaterman/BandedSmithWaterman.h | 111 --
external/vcflib/smithwaterman/IndelAllele.cpp | 62 -
external/vcflib/smithwaterman/IndelAllele.h | 37 -
external/vcflib/smithwaterman/LeftAlign.cpp | 853 ---------
external/vcflib/smithwaterman/LeftAlign.h | 32 -
external/vcflib/smithwaterman/Makefile | 34 -
external/vcflib/smithwaterman/Mosaik.h | 73 -
external/vcflib/smithwaterman/Repeats.cpp | 69 -
external/vcflib/smithwaterman/Repeats.h | 8 -
external/vcflib/smithwaterman/SWMain.cpp | 126 --
.../vcflib/smithwaterman/SmithWatermanGotoh.cpp | 741 --------
external/vcflib/smithwaterman/SmithWatermanGotoh.h | 100 -
external/vcflib/smithwaterman/convert.h | 22 -
external/vcflib/smithwaterman/smithwaterman.cpp | 246 ---
external/vcflib/split.cpp | 23 -
external/vcflib/split.h | 53 -
external/vcflib/tabixpp/ChangeLog | 593 ------
external/vcflib/tabixpp/NEWS | 126 --
external/vcflib/tabixpp/README | 6 -
external/vcflib/tabixpp/bam_endian.h | 42 -
external/vcflib/tabixpp/bedidx.c | 156 --
external/vcflib/tabixpp/bgzf.c | 711 -------
external/vcflib/tabixpp/bgzf.h | 157 --
external/vcflib/tabixpp/bgzip.c | 206 --
external/vcflib/tabixpp/index.c | 998 ----------
external/vcflib/tabixpp/khash.h | 486 -----
external/vcflib/tabixpp/knetfile.c | 632 ------
external/vcflib/tabixpp/knetfile.h | 75 -
external/vcflib/tabixpp/kseq.h | 227 ---
external/vcflib/tabixpp/ksort.h | 271 ---
external/vcflib/tabixpp/kstring.c | 165 --
external/vcflib/tabixpp/kstring.h | 68 -
external/vcflib/tabixpp/main.c | 290 ---
external/vcflib/tabixpp/main.cpp | 47 -
external/vcflib/tabixpp/tabix.1 | 132 --
external/vcflib/tabixpp/tabix.cpp | 90 -
external/vcflib/tabixpp/tabix.h | 145 --
external/vcflib/tabixpp/tabix.hpp | 31 -
55 files changed, 12233 deletions(-)
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