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commit b4796b909ed78ccb5ce7cc70f9aeeb83f35d0eb3 Author: Kevin Murray <[email protected]> Date: Sun Jan 15 16:22:03 2017 +1100 Future-proof test workaround patch --- debian/changelog | 7 +++++++ debian/patches/0006-restore-bin.patch | 14 ++++---------- 2 files changed, 11 insertions(+), 10 deletions(-) diff --git a/debian/changelog b/debian/changelog index 1cbb209..77c0815 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,10 @@ +snakemake (3.9.1-2) UNRELEASED; urgency=medium + + * Future-proof patch to work-around missing snakemake binary when running + tests before installation + + -- Kevin Murray <[email protected]> Sun, 15 Jan 2017 16:23:25 +1100 + snakemake (3.9.1-1) unstable; urgency=medium * Team upload diff --git a/debian/patches/0006-restore-bin.patch b/debian/patches/0006-restore-bin.patch index eac0e93..4f29501 100644 --- a/debian/patches/0006-restore-bin.patch +++ b/debian/patches/0006-restore-bin.patch @@ -5,16 +5,10 @@ Description: Version 3.9.1 is lacking snakemake executable - using the --- /dev/null +++ b/bin/snakemake -@@ -0,0 +1,12 @@ +@@ -0,0 +1,6 @@ +#!/usr/bin/python3 -+# EASY-INSTALL-ENTRY-SCRIPT: 'snakemake==3.9.1','console_scripts','snakemake' -+__requires__ = 'snakemake==3.9.1' -+import re +import sys -+from pkg_resources import load_entry_point ++import snakemake + -+if __name__ == '__main__': -+ sys.argv[0] = re.sub(r'(-script\.pyw?|\.exe)?$', '', sys.argv[0]) -+ sys.exit( -+ load_entry_point('snakemake==3.9.1', 'console_scripts', 'snakemake')() -+ ) ++ ++sys.exit(snakemake.main()) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/snakemake.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
