This is an automated email from the git hooks/post-receive script. moeller pushed a commit to branch master in repository bowtie2.
commit 71862e37a5a83219d0c23639794d446081adf44a Author: Steffen Moeller <[email protected]> Date: Sun Jan 15 19:16:18 2017 +0100 Corrected EDAM annotation file --- debian/upstream/edam | 100 +++++++++++++++++++++++++++------------------------ 1 file changed, 53 insertions(+), 47 deletions(-) diff --git a/debian/upstream/edam b/debian/upstream/edam index e55d751..ee98e00 100644 --- a/debian/upstream/edam +++ b/debian/upstream/edam @@ -1,48 +1,54 @@ +--- ontology: EDAM (1.13) -topic: topic_0622 Genomics -scope: summary - function: operation_3211 Genome indexing - function: operation_0292 Sequence alignment generation - input: data_2975 Nucleic acid sequence (raw) - input: format_1929 FASTA - input: format_1930 FASTQ - output: data_1383 Sequence alignment (nucleic acid) - output: format_2573 SAM -scope: bowtie-build - function: operation_3211 Genome indexing - input: data_2975 Nucleic acid sequence (raw) - input: format_1929 FASTA - output: data_3210 Genome index - output: ??? Bowtie index format EBWT - output: ??? Bowtie long index format EBTWL -scope: bowtie-inspect - function: operation_1813 Sequence retrieval - function: operation_0304 Metadata retrieval - function: operation_0228 Data index analysis - input: data_3210 Genome index - input: ??? Bowtie index format EBWT - input: ??? Bowtie long index format EBTWL - output: data_2975 Nucleic acid sequence (raw) - output: format_1929 FASTA - output: format_1964 plain text format (unformatted) -scope: bowtie - function: operation_0350 Sequence database search (by sequence using word-based methods) - function: operation_0292 Sequence alignment generation - input: data_3210 Genome index - input: data_2975 Nucleic acid sequence (raw) - input: format_1964 plain text format (unformatted) - input: format_1929 FASTA - input: format_1930 FASTQ - output: data_1383 Sequence alignment (nucleic acid) - output: data_0867 Sequence alignment report - output: format_2573 SAM - output: ??? Bowtie alignment report format - -topic: topic_0622 Genomics -function: operation_3211 Genome indexing -function: operation_0292 Sequence alignment generation -input: data_2975 Nucleic acid sequence (raw) -input: format_1929 FASTA -input: format_1930 FASTQ -output: data_1383 Sequence alignment (nucleic acid) -output: format_2573 SAM +topic: Genomics +scopes: + - name: summary + function: + - Genome indexing + - Sequence alignment generation + input: + - data: Nucleic acid sequence (raw) + format: [FASTA, FASTQ] + output: + - data: Sequence alignment (nucleic acid) + format: SAM + - name: bowtie-build + function: Genome indexing + input: + - data: Nucleic acid sequence (raw) + format: [FASTA] + output: + - data: Genome index + format: + - ebwt + - ebwtl + - name: bowtie-inspect + function: + - Sequence retrieval + - Metadata retrieval + - Data index analysis + input: + - data: Genome index + format: [ebtw, ebtwl] + output: + - data: Nucleic acid sequence (raw) + output: [FASTA, plain text format (unformatted)] + - name: bowtie + function: + - Sequence database search (by sequence using word-based methods) + - Sequence alignment generation + input: + - data: Genome index + format: [ebtw, ebtwl] + - data: Nucleic acid sequence (raw) + format: + - plain text format (unformatted) + - FASTA + - FASTQ + output: + - data: Sequence alignment (nucleic acid) + format: SAM + - data: Sequence alignment report + format: + - plain text format (unformatted) + - Bowtie alignment report format -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bowtie2.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
