This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository pbgenomicconsensus.
commit 82f8f8cb4a1d590336a68b87da5672dcd5992476 Author: Afif Elghraoui <[email protected]> Date: Sat Jul 23 19:37:57 2016 -0700 Update manpage for new release --- debian/man/variantCaller.1.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/debian/man/variantCaller.1.md b/debian/man/variantCaller.1.md index c7c4aa2..f749cd7 100644 --- a/debian/man/variantCaller.1.md +++ b/debian/man/variantCaller.1.md @@ -187,6 +187,9 @@ release of SMRTanalysis 3.0 or build from GitHub sources.* Running a large-scale resequencing/polishing job in SMRTanalysis 2.3 -------------------------------------------------------------------- +We do not recommend attempting to construct a single giant cmp.h5 file and then processing it on a single node. +This is inefficient and users attempting to do this have run into many problems with the instability of the HDF5 library (which PacBio is moving away from, in favor of BAM.) + To run a large-scale resequencing job (\>50 megabase genome @ 50x coverage,nominally), you want to spread the computation load across multiple nodes in your computing cluster. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbgenomicconsensus.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
