This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository spades.
commit ec8ce0a931bdb6cbbe5562d1ba882063ffae125e Author: Michael R. Crusoe <[email protected]> Date: Wed Apr 19 02:55:13 2017 -0700 update copyright for new release --- debian/copyright | 67 +++++++++++--------------------------------------------- 1 file changed, 13 insertions(+), 54 deletions(-) diff --git a/debian/copyright b/debian/copyright index 7225ba8..dcf502e 100644 --- a/debian/copyright +++ b/debian/copyright @@ -4,7 +4,8 @@ Upstream-Contact: [email protected] Source: http://spades.bioinf.spbau.ru/ Files-Excluded: ext/src/python_libs - ext/tools/bwa-* + ext/tools/bwa* + ext/src/bwa ext/include/boost ext/include/samtools ext/src/samtools/misc/ace2sam @@ -25,7 +26,7 @@ Files-Excluded: Files: * Copyright: 2011-2014 Saint-Petersburg Academic University - 2015 Saint Petersburg State University + 2015-2017 Saint Petersburg State University License: GPL-2+ Files: debian/* @@ -34,7 +35,7 @@ Copyright: 2014-2016 Andreas Tille <[email protected]> 2016 Sascha Steinbiss <[email protected]> License: GPL-2+ -Files: src/ionhammer/seqeval/* +Files: src/projects/ionhammer/seqeval/* Copyright: (C) 2012-2013 Ion Torrent Systems, Inc. All Rights Reserved License: GPL-2+ Comment: @@ -66,7 +67,7 @@ License: GPL-2+ On Debian systems you can find the full test of the GNU General Public License version 2 at /usr/share/common-licenses/GPL-2. -Files: src/hammer/parallel_radix_sort.hpp +Files: src/projects/hammer/parallel_radix_sort.hpp Copyright: (c) 2010 Takuya Akiba License: BSD-3-clause-Akiba Redistribution and use in source and binary forms, with or without @@ -97,7 +98,7 @@ License: BSD-3-clause-Akiba (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. -Files: src/include/xmath.h +Files: src/common/math/xmath.h ext/include/sparsehash/* Copyright: (c) 2005 Google Inc. License: BSD-3-clause-Google @@ -219,34 +220,6 @@ License: MIT Comment: This file is taken from LLVM's libc++. See http://llvm.org/docs/DeveloperPolicy.html#license. -Files: ext/include/nlopt/* - ext/src/nlopt/* -Copyright: (c) 2007-2012 Massachusetts Institute of Technology -License: MIT - -Files: ext/include/nlopt/esch.h - ext/src/nlopt/esch/* -Copyright: (c) 2008-2013 Carlos Henrique da Silva Santos -License: MIT - -Files: ext/include/nlopt/bobyqa.h -Copyright: (c) 2009 M. J. D. Powell ([email protected]) - (c) 2010 Massachusetts Institute of Technology -License: MIT - -Files: ext/include/nlopt/cobyla.h - ext/src/nlopt/cobyla/* -Copyright: (c) 1992, Michael J. D. Powell ([email protected]) - (c) 2004, Jean-Sebastien Roy ([email protected]) - (c) 2008, Steven G. Johnson ([email protected]) -License: MIT - -Files: ext/src/nlopt/util/mt19937ar.c -Copyright: (c) 1997-2002 Makoto Matsumoto ([email protected]) - (c) 1997-2002 Takuji Nishimura - (c) 2007,2009 Steven G. Johnson -License: BSD-3-clause - Files: ext/src/llvm/reg* Copyright: (c) 1992, 1993, 1994 Henry Spencer. (c) 1992, 1993, 1994 The Regents of the University of California. All rights reserved. @@ -285,24 +258,11 @@ Copyright: (c) 2008-2009 Genome Research Ltd. (c) 2008 Broad Institute / Massachusetts Institute of Technology License: MIT -Files: ext/src/ssw/* - ext/include/ssw/* -Copyright: (c) 2012-1015 Boston College -License: MIT -Comment: - Please find original license attribution for this code at: - https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library - Files: ext/include/city/* ext/src/cityhash/* Copyright: (c) 2011 Google, Inc. License: MIT -Files: ext/include/htrie/* - ext/src/htrie/* -Copyright: (c) 2011 Daniel C. Jones <[email protected]> -License: MIT - Files: ext/include/cxxopts/* Copyright: (c) 2014, 2015, 2016 Jarryd Beck License: MIT @@ -334,6 +294,10 @@ Files: ext/include/folly/* Copyright: 2014 Facebook, Inc. License: Apache-2 +Files: ext/include/cuckoo/* +Copyright: 2013, Carnegie Mellon University and Intel Corporation +License: Apache-2 + License: Apache-2 Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. @@ -352,7 +316,7 @@ Files: ext/include/cppformat/* Copyright: (c) 2012-2014 Victor Zverovich License: BSD-2-clause -Files: src/include/io/mpmc_bounded.hpp +Files: src/common/io/reads/mpmc_bounded.hpp Copyright: (c) 2015 Saint Petersburg State University (c) 2011-2014 Saint Petersburg Academic University (c) 2011 Dmitry Vyukov. All rights reserved. @@ -380,6 +344,7 @@ License: BSD-2-clause SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Files: ext/include/getopt_pp/* + ext/src/getopt_pp/* Copyright: (C) 2007, 2008 Daniel Gutson, FuDePAN License: GPL-3+ @@ -424,7 +389,7 @@ License: Boost-1 ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -Files: src/hammer/quake_correct/gzstream.* +Files: src/projects/hammer/quake_correct/gzstream.* Copyright: (C) 2001 Deepak Bandyopadhyay (C) 2001 Lutz Kettner License: LGPL-2.1+ @@ -476,9 +441,3 @@ License: BSDlike-libbzip2 WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - -Files: ext/src/htrie/murmurhash* -Copyright: Austin Appleby -License: public-domain - The original C++ code was placed in the public domain by its author, - Austin Appleby. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/spades.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
