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commit f6dc0b12e37dffb374a5e5b1c775208776a29bb7 Merge: 3a13568 36f3b27 Author: Alexandre Mestiashvili <[email protected]> Date: Wed May 24 09:47:01 2017 +0200 Merge tag 'upstream/2.3.2' Upstream version 2.3.2 .travis.yml | 1 + MANUAL | 58 +- MANUAL.markdown | 58 +- Makefile | 4 +- NEWS | 23 +- VERSION | 2 +- aligner_bt.cpp | 6 +- aligner_result.cpp | 46 +- aligner_result.h | 299 +++++---- aligner_seed.cpp | 5 +- aligner_seed.h | 30 +- aligner_seed2.h | 2 + aligner_sw.cpp | 9 +- aligner_sw_driver.cpp | 9 +- aligner_swsse_ee_i16.cpp | 2 + aligner_swsse_ee_u8.cpp | 2 + aligner_swsse_loc_i16.cpp | 2 + aligner_swsse_loc_u8.cpp | 2 + aln_sink.cpp | 255 +++++++- aln_sink.h | 19 +- bowtie2 | 4 +- bowtie_main.cpp | 241 +------ bt2_search.cpp | 59 +- doc/manual.html | 54 +- doc/website/manual.ssi | 1480 +++++++++++++++++++++++------------------- doc/website/recent_news.ssi | 11 + doc/website/rhsidebar.ssi | 4 +- pat.cpp | 18 +- read.h | 12 +- sam.cpp | 132 ++-- scripts/test/simple_tests.pl | 14 +- unique.h | 26 +- 32 files changed, 1624 insertions(+), 1265 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bowtie2.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
