This is an automated email from the git hooks/post-receive script. satta pushed a commit to branch experimental in repository rna-star.
commit 5bc6bcade343cc4f8ea77dc6a26cf55b1c81b2b7 Merge: b6ba5fd f253b49 Author: Sascha Steinbiss <[email protected]> Date: Wed May 31 17:41:15 2017 +0200 Merge tag 'upstream/2.5.3a+dfsg' into experimental Upstream version 2.5.3a+dfsg .travis.yml | 11 + CHANGES.md | 13 + README.md | 18 +- doc/STARmanual.pdf | Bin 251507 -> 264875 bytes extras/doc-latex/STARmanual.tex | 32 +- extras/doc-latex/parametersDefault.tex | 79 +- extras/scripts/tagXSstrandedData.awk | 35 + source/BAMbinSortByCoordinate.cpp | 2 +- source/BAMbinSortUnmapped.cpp | 2 +- source/Chain.cpp | 126 + source/Chain.h | 30 + source/Genome.cpp | 42 +- source/Genome.h | 2 +- source/IncludeDefine.h | 3 +- source/Makefile | 2 +- source/Parameters.cpp | 134 +- source/Parameters.h | 34 +- source/ReadAlign_alignBAM.cpp | 14 +- source/ReadAlign_chimericDetection.cpp | 82 +- source/ReadAlign_multMapSelect.cpp | 5 +- source/ReadAlign_outputAlignments.cpp | 2 +- source/ReadAlign_outputTranscriptSAM.cpp | 3 + source/STAR.cpp | 49 +- source/SharedMemory.cpp | 10 +- source/SharedMemory.h | 2 +- source/VERSION | 2 +- source/bamRemoveDuplicates.cpp | 37 +- source/genomeGenerate.cpp | 11 +- source/genomeParametersWrite.cpp | 6 + source/parametersDefault | 27 +- source/parametersDefault.xxd | 4548 +++++++++++++++--------------- 31 files changed, 2979 insertions(+), 2384 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/rna-star.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
