This is an automated email from the git hooks/post-receive script. rovenskasa-guest pushed a commit to branch master in repository fastx-toolkit.
commit e15a1b1b857dedb57822c59bed3d60e6ac84d45b Author: Nadiya Sitdykova <[email protected]> Date: Mon Jun 5 20:43:01 2017 -0400 add tests for fastx_quality_stats and fastq_quality_filter --- debian/changelog | 1 + debian/tests/run-unit-test | 14 +++++++------- 2 files changed, 8 insertions(+), 7 deletions(-) diff --git a/debian/changelog b/debian/changelog index 3748466..487c9cd 100644 --- a/debian/changelog +++ b/debian/changelog @@ -4,6 +4,7 @@ fastx-toolkit (0.0.14-4) unstable; urgency=low [ Nadiya Sitdykova ] * Add autopkgtest test-suite + * Add tests for fastx_quality_stats and fastq_quality_filter -- Nadiya Sitdykova <[email protected]> Mon, 05 Jun 2017 17:55:44 -0400 diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test index 93684aa..590613b 100644 --- a/debian/tests/run-unit-test +++ b/debian/tests/run-unit-test @@ -26,8 +26,8 @@ fastq_to_fasta -i fastq_to_fasta1.fastq -r -n -o out check fastq_to_fasta1b.out out echo "testing fastx_quality_stats" -fastx_quality_stats -i fastq_stats1.fastq -o out -#check fastq_stats1.out out +fastx_quality_stats -Q64 -i fastq_stats1.fastq -o out +check fastq_stats1.out out echo "testing fastx_clipper" fastx_clipper -i fastx_clipper1.fastq -a CAATTGGTTAATCCCCCTATATA -c -o out @@ -52,11 +52,11 @@ check fastx_artifacts1.out out fastx_artifacts_filter -i fastx_artifacts2.fastq -o out check fastx_artifacts2.out out -#echo "testing fastq_quality_filter" -#fastq_quality_filter -i fastq_qual_filter1.fastq -q 33 -p 100 -o out -#check fastx_qual_filter1a.out out -#fastq_quality filter -i fastq_qual_filter1.fastq -q 20 -p 100 -o out -#check fastq_qual_filter1b.out out +echo "testing fastq_quality_filter" +fastq_quality_filter -Q64 -i fastq_qual_filter1.fastq -q 33 -p 100 -o out +check fastx_qual_filter1a.out out +fastq_quality filter -Q64 -i fastq_qual_filter1.fastq -q 20 -p 100 -o out +check fastq_qual_filter1b.out out echo "testing fastx_reverse_complement" fastx_reverse_complement -i fastx_rev_comp1.fasta -o out -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/fastx-toolkit.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
