This is an automated email from the git hooks/post-receive script. ucko pushed a commit to branch experimental in repository ncbi-entrez-direct.
commit 36da36e3216eb1c344a4c3ba3d6bea22d55ef395 Author: Aaron M. Ucko <[email protected]> Date: Fri Jun 9 17:59:45 2017 -0400 Install the new asp-ls and gbf2xml scripts. Install asp-ls as an example (alongside asp-cp) and gbf2xml as an executable; give gbf2xml a man page. --- debian/changelog | 4 +++- debian/examples | 2 ++ debian/man/gbf2xml.1 | 21 +++++++++++++++++++++ debian/rules | 2 +- 4 files changed, 27 insertions(+), 2 deletions(-) diff --git a/debian/changelog b/debian/changelog index 717af85..3441f2c 100644 --- a/debian/changelog +++ b/debian/changelog @@ -2,8 +2,10 @@ ncbi-entrez-direct (6.80.20170608+ds-1) UNRELEASED; urgency=medium * New upstream release. (NOT RELEASED YET.) * debian/man/ftp-cp.1: Update accordingly. + * Install the new asp-ls script as an example (alongside asp-cp) and + the new gbf2xml script as an executable; give gbf2xml a man page. - -- Aaron M. Ucko <[email protected]> Fri, 09 Jun 2017 17:58:00 -0400 + -- Aaron M. Ucko <[email protected]> Fri, 09 Jun 2017 17:59:43 -0400 ncbi-entrez-direct (6.70.20170508+ds-1) experimental; urgency=medium diff --git a/debian/examples b/debian/examples index 5b95074..2913960 100644 --- a/debian/examples +++ b/debian/examples @@ -1 +1,3 @@ asp-cp +asp-ls + diff --git a/debian/man/gbf2xml.1 b/debian/man/gbf2xml.1 new file mode 100644 index 0000000..c1b1aa2 --- /dev/null +++ b/debian/man/gbf2xml.1 @@ -0,0 +1,21 @@ +.TH GBF2XML 1 2017-06-09 NCBI "NCBI Entrez Direct User's Manual" +.SH NAME +gbf2xml \- Convert GenBank flatfiles to INSDSeq XML +.SH SYNOPSIS +.B gbf2xml +\[\|.I filename\|\] +.SH DESCRIPTION +\fBgbf2xml\fP reads the specified GenBank flatfile +(or from standard input when not passed a filename) +and writes a corresponding INSDSeq XML document +to standard output. +.SH BUGS +Feature intervals that refer to 'far' locations, i.e., those not within +the cited record and which have an accession and colon, are suppressed. +Those rare features (e.g., trans\-splicing between molecules) are lost. + +Keywords and References are currently not supported. +.SH SEE ALSO +.BR asn2ff (1), +.BR asn2gb (1), +.BR xtract (1). diff --git a/debian/rules b/debian/rules index d8fbd18..7d478f3 100755 --- a/debian/rules +++ b/debian/rules @@ -13,7 +13,7 @@ MODES = address citmatch contact filter link notify post proxy search spell STD_WRAPPERS = $(MODES:%=bin/e%) WRAPPERS = $(STD_WRAPPERS) bin/esummary AS_IS_SCRIPTS = amino-acid-composition between-two-genes edirutil \ - entrez-phrase-search filter-stop-words ftp-* \ + entrez-phrase-search filter-stop-words ftp-* gbf2xml \ join-into-groups-of nquire reorder-columns sort-uniq-count* \ word-at-a-time xy-plot -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/ncbi-entrez-direct.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
