This is an automated email from the git hooks/post-receive script. moeller pushed a commit to branch master in repository python-biopython.
commit 93f39f784e19221cea55ff26530d5d4ec627f692 Author: Steffen Moeller <[email protected]> Date: Mon Jul 24 15:32:46 2017 +0200 Preparations for new Upstream versions --- debian/changelog | 11 +++++++++++ debian/control | 2 ++ debian/patches/fix_test_phyml_tool.patch | 18 ------------------ debian/patches/series | 3 +-- debian/rules | 22 ++++++++++++++-------- debian/upstream/metadata | 7 +++++++ 6 files changed, 35 insertions(+), 28 deletions(-) diff --git a/debian/changelog b/debian/changelog index 90fee5d..5444042 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,14 @@ +python-biopython (1.70+dfsg-1) unstable; urgency=medium + + * Team upload + + * New upstream release. + * debian/upstream/metadata: Added references to + OMICtools, bio.tools, RRID + * debian/rules: Merged two redundant clean overrides + + -- Steffen Moeller <[email protected]> Sun, 23 Jul 2017 18:08:39 +0200 + python-biopython (1.68+dfsg-3) unstable; urgency=medium * (Build-)Depend: phyml only on those architectures where it is available diff --git a/debian/control b/debian/control index d4ac52e..b0bc428 100644 --- a/debian/control +++ b/debian/control @@ -12,6 +12,8 @@ Build-Depends: debhelper (>= 10), flex, python-reportlab, python3-reportlab, + python-numpy, + python3-numpy, hevea, texlive-latex-base, texlive-latex-extra, diff --git a/debian/patches/fix_test_phyml_tool.patch b/debian/patches/fix_test_phyml_tool.patch deleted file mode 100644 index 75014df..0000000 --- a/debian/patches/fix_test_phyml_tool.patch +++ /dev/null @@ -1,18 +0,0 @@ -Author: Andreas Tille <[email protected]> -Bug-Debian: https://bugs.debian.org/799820 -Forwarded: https://bugs.debian.org/799820#12 -Last-Update: Wed, 23 Sep 2015 10:34:47 +0200 -Description: Fix test_phyml_tool.py - Remove ".txt" extention that should not be there - ---- a/Tests/test_phyml_tool.py -+++ b/Tests/test_phyml_tool.py -@@ -52,7 +52,7 @@ class AppTests(unittest.TestCase): - self.assertTrue(len(out) > 0) - self.assertEqual(len(err), 0) - # Check the output tree -- tree = Phylo.read(EX_PHYLIP + '_phyml_tree.txt', 'newick') -+ tree = Phylo.read(EX_PHYLIP + '_phyml_tree', 'newick') - self.assertEqual(tree.count_terminals(), 4) - finally: - # Clean up generated files diff --git a/debian/patches/series b/debian/patches/series index 0336d64..f9f0bf7 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1,4 +1,3 @@ remove_mathml-qname.patch privacy_breach.patch -fix_test_phyml_tool.patch -test_phenotype_fit_on_arm64.patch +#test_phenotype_fit_on_arm64.patch diff --git a/debian/rules b/debian/rules index 2578448..138e1e1 100755 --- a/debian/rules +++ b/debian/rules @@ -58,6 +58,20 @@ EXCLUDEPACKAGEINFLUX=samtools_tool override_dh_auto_clean: dh_auto_clean cd Doc && make distclean + rm -f Doc/install/Installation.pdf + rm -f Doc/install/Installation.txt + rm -f Doc/install/Installation.html + rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf + rm -f Doc/Tutorial/*.aux + rm -rf biopython.egg-info + + dh_auto_clean + if [ -d Tests_avoid ] ; then \ + mv Tests_avoid/* Tests ; \ + rmdir Tests_avoid ; \ + fi + + rm -rf debian/tmp_tests override_dh_auto_build: dh_auto_build @@ -119,11 +133,3 @@ override_dh_installdocs-indep: find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.lyx" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -type d -empty -delete - -override_dh_auto_clean: - dh_auto_clean - if [ -d Tests_avoid ] ; then \ - mv Tests_avoid/* Tests ; \ - rmdir Tests_avoid ; \ - fi - rm -rf debian/tmp_tests diff --git a/debian/upstream/metadata b/debian/upstream/metadata index 1f7b652..eb737ba 100644 --- a/debian/upstream/metadata +++ b/debian/upstream/metadata @@ -10,3 +10,10 @@ Reference: DOI: 10.1093/bioinformatics/btp163 URL: http://bioinformatics.oxfordjournals.org/content/early/2009/03/20/bioinformatics.btp163.abstract eprint: http://bioinformatics.oxfordjournals.org/content/early/2009/03/20/bioinformatics.btp163.full.pdf+html +Registry: + - Name: RRID + Entry: SCR_007173 + - Name: bio.tools + Entry: Biopython + - Name: OMICtools + Entry: OMIC_04850 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-biopython.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
