This is an automated email from the git hooks/post-receive script. osallou pushed a commit to branch master in repository biomaj3-process.
commit 1f5aef8da1cd0e01d7b1ccc8c1530a4f4ba4c3bf Author: Olivier Sallou <[email protected]> Date: Wed Aug 30 07:16:45 2017 +0000 New upstream version 3.0.8 --- CHANGES.txt | 2 ++ README.md | 8 ++++---- biomaj_process/process.py | 4 ++-- config.yml | 1 - setup.py | 2 +- 5 files changed, 9 insertions(+), 8 deletions(-) diff --git a/CHANGES.txt b/CHANGES.txt index 162af9b..4f7ef30 100644 --- a/CHANGES.txt +++ b/CHANGES.txt @@ -1,3 +1,5 @@ +3.0.8: + Fix #1, DRMAA needs colon in front of output and error path (mandatory depending on versions) 3.0.7: fix case if process desc or type is missing in bank properties 3.0.6: diff --git a/README.md b/README.md index 35cca55..b069001 100644 --- a/README.md +++ b/README.md @@ -33,9 +33,9 @@ If you cloned the repository and installed it via python setup.py install, just export BIOMAJ_CONFIG=path_to_config.yml - rm -rf ..path_to/godocker-prometheus-multiproc - mkdir -p ..path_to/godocker-prometheus-multiproc - export prometheus_multiproc_dir=..path_to/godocker-prometheus-multiproc - gunicorn biomaj_download.biomaj_process_web:app + rm -rf ..path_to/prometheus-multiproc + mkdir -p ..path_to/prometheus-multiproc + export prometheus_multiproc_dir=..path_to/prometheus-multiproc + gunicorn -c ..path_to/gunicorn_conf.py biomaj_download.biomaj_process_web:app Web processes should be behind a proxy/load balancer, API base url /api/download diff --git a/biomaj_process/process.py b/biomaj_process/process.py index a040714..495e32e 100644 --- a/biomaj_process/process.py +++ b/biomaj_process/process.py @@ -338,8 +338,8 @@ class DrmaaProcess(Process): jt.jobEnvironment = self.bank_env if self.native: jt.nativeSpecification = " " + self.native + " " - jt.outputPath = self.output_file - jt.errorPath = self.error_file + jt.outputPath = ':' + self.output_file + jt.errorPath = ':' + self.error_file jobid = s.runJob(jt) retval = s.wait(jobid, drmaa.Session.TIMEOUT_WAIT_FOREVER) if retval.hasExited > 0: diff --git a/config.yml b/config.yml index 6645d15..bfaf214 100644 --- a/config.yml +++ b/config.yml @@ -2,7 +2,6 @@ redis: host: '127.0.0.1' - #host: '131.254.17.40' port: 6379 db: 0 prefix: 'biomaj' diff --git a/setup.py b/setup.py index 16ff240..763a644 100644 --- a/setup.py +++ b/setup.py @@ -21,7 +21,7 @@ config = { 'url': 'http://biomaj.genouest.org', 'download_url': 'http://biomaj.genouest.org', 'author_email': '[email protected]', - 'version': '3.0.7', + 'version': '3.0.8', 'classifiers': [ # How mature is this project? Common values are # 3 - Alpha -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/biomaj3-process.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
