This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-cran-adephylo.
commit 94a30a40fc6d66fdbf92b26cd656aa1d1d023ade Author: Andreas Tille <[email protected]> Date: Wed Jun 29 11:21:18 2016 +0000 Fix control and tests --- debian/README.test | 7 +++---- debian/changelog | 1 - debian/control | 10 +++++----- debian/docs | 1 - debian/examples | 1 + debian/tests/run-unit-test | 19 +++++++++++++------ 6 files changed, 22 insertions(+), 17 deletions(-) diff --git a/debian/README.test b/debian/README.test index 8d70ca3..55a9142 100644 --- a/debian/README.test +++ b/debian/README.test @@ -1,9 +1,8 @@ Notes on how this package can be tested. ──────────────────────────────────────── -This package can be tested by running the provided test: +To run the unit tests provided by the package you can do -cd tests -LC_ALL=C R --no-save < testthat.R + sh run-unit-test -in order to confirm its integrity. +in this directory. diff --git a/debian/changelog b/debian/changelog index 6d64689..9eefb4d 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,6 +1,5 @@ r-cran-adephylo (1.1-6-1) UNRELEASED; urgency=low * Initial release (Closes: #???) - TODO: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-adegenet/trunk/ -- Andreas Tille <[email protected]> Tue, 22 Mar 2016 21:32:09 +0100 diff --git a/debian/control b/debian/control index 09fb83d..aadfe34 100644 --- a/debian/control +++ b/debian/control @@ -5,12 +5,12 @@ Section: gnu-r Priority: optional Build-Depends: debhelper (>= 9), cdbs, - r-base-dev + r-base-dev, r-cran-ade4, r-cran-ape, r-cran-phylobase, -# r-cran-adegenet -Standards-Version: 3.9.7 + r-cran-adegenet +Standards-Version: 3.9.8 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-adephylo/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-adephylo/trunk/ Homepage: https://cran.r-project.org/web/packages/adephylo/ @@ -19,11 +19,11 @@ Package: r-cran-adephylo Architecture: any Depends: ${misc:Depends}, ${shlibs:Depends}, - ${R:Depends} + ${R:Depends}, r-cran-ade4, r-cran-ape, r-cran-phylobase, -# r-cran-adegenet + r-cran-adegenet Description: GNU R exploratory analyses for the phylogenetic comparative method This GNU R package provides multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. diff --git a/debian/docs b/debian/docs index 960011c..9a4f4f8 100644 --- a/debian/docs +++ b/debian/docs @@ -1,3 +1,2 @@ -tests debian/README.test debian/tests/run-unit-test diff --git a/debian/examples b/debian/examples new file mode 100644 index 0000000..18244c8 --- /dev/null +++ b/debian/examples @@ -0,0 +1 @@ +vignettes diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test index b1aa7d1..ced9b03 100644 --- a/debian/tests/run-unit-test +++ b/debian/tests/run-unit-test @@ -1,12 +1,19 @@ #!/bin/sh -e - -oname=adegenet -pkg=r-cran-`echo $oname | tr [A-Z] [a-z]` +oname=adephylo +pkg=r-cran-`echo $oname | tr '[A-Z]' '[a-z]'` if [ "$ADTTMP" = "" ] ; then ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` + trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM fi cd $ADTTMP -cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP -LC_ALL=C R --no-save < testthat.R -rm -fr $ADTTMP/* +cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP +find . -name "*.gz" -exec gunzip \{\} \; +for rnw in `ls *.[rRS]nw` ; do +rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'` +R --no-save <<EOT + Stangle("$rnw") + source("$rfile", echo=TRUE) +EOT + echo "$rnw passed" +done -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-adephylo.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
