This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-cran-adephylo.
commit 8ed7d55b046950226a23525e5344dd6060f70eba Merge: 8613adf 8182c31 Author: Andreas Tille <[email protected]> Date: Mon Oct 2 23:56:47 2017 +0200 Updated version 1.1-10 from 'upstream/1.1-10' with Debian dir d77a9cb3592f1967bfc1995e73750085df51d6fc ChangeLog | 122 ++++ DESCRIPTION | 20 + MD5 | 83 +++ NAMESPACE | 60 ++ R/abouheif.R | 147 ++++ R/adephylo-package.R | 619 +++++++++++++++++ R/bullseye.R | 207 ++++++ R/dibas.R | 605 +++++++++++++++++ R/distances.R | 327 +++++++++ R/moran.R | 96 +++ R/orthobasis.R | 152 +++++ R/orthogram.R | 332 +++++++++ R/partition.R | 232 +++++++ R/ppca.R | 699 +++++++++++++++++++ R/proximities.R | 183 +++++ R/table.phylo4d.R | 413 ++++++++++++ R/utils.R | 288 ++++++++ R/zzz.R | 3 + build/vignette.rds | Bin 0 -> 243 bytes data/carni19.RData | Bin 0 -> 651 bytes data/carni70.RData | Bin 0 -> 1868 bytes data/lizards.RData | Bin 0 -> 883 bytes data/maples.RData | Bin 0 -> 2030 bytes data/mjrochet.RData | Bin 0 -> 2384 bytes data/palm.RData | Bin 0 -> 3447 bytes data/procella.RData | Bin 0 -> 1156 bytes data/tithonia.RData | Bin 0 -> 913 bytes data/ungulates.RData | Bin 0 -> 724 bytes inst/CITATION | 13 + inst/doc/adephylo.R | 283 ++++++++ inst/doc/adephylo.Rnw | 665 ++++++++++++++++++ inst/doc/adephylo.pdf | Bin 0 -> 231481 bytes man/abouheif.Rd | 115 ++++ man/adephylo-package.Rd | 132 ++++ man/bullseye.Rd | 97 +++ man/carni19.Rd | 37 + man/carni70.Rd | 55 ++ man/dibas.Rd | 149 +++++ man/distRoot.Rd | 74 ++ man/distTips.Rd | 100 +++ man/listDD.Rd | 46 ++ man/listTips.Rd | 42 ++ man/lizards.Rd | 75 +++ man/maples.Rd | 56 ++ man/miscUtils.Rd | 50 ++ man/mjrochet.Rd | 54 ++ man/moranIdx.Rd | 76 +++ man/orthobasis.Rd | 125 ++++ man/orthogram.Rd | 154 +++++ man/palm.Rd | 59 ++ man/ppca.Rd | 265 ++++++++ man/procella.Rd | 51 ++ man/proxTips.Rd | 148 ++++ man/sp.tips.Rd | 68 ++ man/table.phylo4d.Rd | 155 +++++ man/tithonia.Rd | 61 ++ man/treePart.Rd | 67 ++ man/ungulates.Rd | 58 ++ src/adesub.c | 1152 ++++++++++++++++++++++++++++++++ src/adesub.h | 45 ++ src/distPhylo.c | 368 ++++++++++ src/misc.c | 29 + src/phylog.c | 478 +++++++++++++ src/sptips.c | 482 +++++++++++++ src/sptips.h | 17 + vignettes/adephylo.Rnw | 665 ++++++++++++++++++ vignettes/figs/adephylo-012.pdf | Bin 0 -> 7980 bytes vignettes/figs/adephylo-012.png | Bin 0 -> 4569 bytes vignettes/figs/adephylo-016.pdf | Bin 0 -> 4262 bytes vignettes/figs/adephylo-017.pdf | 293 ++++++++ vignettes/figs/adephylo-017.png | Bin 0 -> 2981 bytes vignettes/figs/adephylo-018.pdf | Bin 0 -> 5319 bytes vignettes/figs/adephylo-aboutest.pdf | Bin 0 -> 4697 bytes vignettes/figs/adephylo-figFourBas.pdf | Bin 0 -> 11018 bytes vignettes/figs/adephylo-lm1.pdf | Bin 0 -> 4918 bytes vignettes/figs/adephylo-loadings.pdf | Bin 0 -> 5742 bytes vignettes/figs/adephylo-orthobas1.pdf | Bin 0 -> 6514 bytes vignettes/figs/adephylo-pca1.pdf | Bin 0 -> 4600 bytes vignettes/figs/adephylo-pca2.pdf | Bin 0 -> 6513 bytes vignettes/figs/adephylo-phylo4d.pdf | Bin 0 -> 6908 bytes vignettes/figs/adephylo-phylo4d.png | Bin 0 -> 6533 bytes vignettes/figs/adephylo-resid.pdf | Bin 0 -> 5900 bytes vignettes/figs/adephylo-treePart.pdf | 139 ++++ vignettes/figs/adephylo-treePart.png | Bin 0 -> 1786 bytes 84 files changed, 11586 insertions(+) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-adephylo.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
