This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository fast5.
commit fbc276d608944b567b7e99729ba61f24848b43ad Author: Afif Elghraoui <[email protected]> Date: Sat Oct 7 00:04:11 2017 -0400 Fix source build in autopkgtest Closes: #876283 --- debian/patches/series | 1 + debian/patches/vpath.patch | 21 +++++++++++++++++++++ debian/tests/control | 4 +++- 3 files changed, 25 insertions(+), 1 deletion(-) diff --git a/debian/patches/series b/debian/patches/series index da8b790..81052c2 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1 +1,2 @@ rpath.patch +vpath.patch diff --git a/debian/patches/vpath.patch b/debian/patches/vpath.patch new file mode 100644 index 0000000..27024bf --- /dev/null +++ b/debian/patches/vpath.patch @@ -0,0 +1,21 @@ +Description: Use VPATH to set prerequisites of fast5 headers + This makes it possible to change the location of the headers while + still keeping them as prerequisites in the Makefile. +Author: Afif Elghraoui <[email protected]> +Forwarded: no +Last-Update: 2017-10-06 +--- fast5.orig/src/Makefile ++++ fast5/src/Makefile +@@ -19,9 +19,11 @@ + HPPTOOLS_DIR ?= hpptools + FAST5_DIR ?= ${CURDIR}/../include + ++VPATH += ${FAST5_DIR} ++ + TARGETS = f5ls f5ls-full hdf5-mod f5-mod + EXTRA_TARGETS = f5dump f5pack +-HPP_FILES := $(addprefix ${FAST5_DIR}/, fast5.hpp fast5/hdf5_tools.hpp fast5/Huffman_Packer.hpp fast5/Bit_Packer.hpp) ++HPP_FILES := fast5.hpp fast5/hdf5_tools.hpp fast5/Huffman_Packer.hpp fast5/Bit_Packer.hpp + + CXXFLAGS := -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic + CPPFLAGS := -isystem ${HDF5_INCLUDE_DIR} -I $(FAST5_DIR) diff --git a/debian/tests/control b/debian/tests/control index d9427c8..474a4b3 100644 --- a/debian/tests/control +++ b/debian/tests/control @@ -1,7 +1,9 @@ Test-Command: cp /usr/share/doc/libfast5-dev/examples/* $ADTTMP && cd $ADTTMP - && make + && make VPATH=/usr/include + HDF5_INCLUDE_DIR=/usr/include/hdf5/serial + HDF5_LIB_DIR=/usr/lib/$(gcc -print-multiarch)/hdf5/serial Depends: build-essential, libfast5-dev, -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/fast5.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
