This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository bcftools.
commit 2d2d47a4228b092d88910eb074356f586470c529 Author: Afif Elghraoui <[email protected]> Date: Thu Oct 12 00:05:25 2017 -0400 Incorporate lost changes from 1.4-3 1.5-1 was made to follow immediately from 1.4-2, so missed an important change made in 1.4-3. Closes: #868958 --- debian/changelog | 8 ++++++++ debian/patches/fix-test_vcf_query.patch | 18 ++++++++++++++++++ debian/patches/series | 1 + 3 files changed, 27 insertions(+) diff --git a/debian/changelog b/debian/changelog index 3bed8ba..4bcc001 100644 --- a/debian/changelog +++ b/debian/changelog @@ -20,6 +20,14 @@ bcftools (1.5-1~exp1) experimental; urgency=medium -- Afif Elghraoui <[email protected]> Tue, 08 Aug 2017 12:35:44 -0400 +bcftools (1.4.1-3) unstable; urgency=medium + + * Team upload. + * Incorporate patches from Ubuntu to fix FTBFS on some 32-bit archs. + * Fix autopkgtests by ensuring presence of all deps. + + -- Sascha Steinbiss <[email protected]> Sat, 29 Jul 2017 10:38:27 +0200 + bcftools (1.4.1-2) unstable; urgency=medium * Team upload diff --git a/debian/patches/fix-test_vcf_query.patch b/debian/patches/fix-test_vcf_query.patch new file mode 100644 index 0000000..9fad479 --- /dev/null +++ b/debian/patches/fix-test_vcf_query.patch @@ -0,0 +1,18 @@ +Description: Fix test_vcf_query on 32-bit architectures + Introduced by upstream commit: + https://github.com/samtools/bcftools/commit/25d042b833987d32e5de1fc3a109d357c4d0f738 +Forwarded: not-yet +Bug-Debian: https://bugs.debian.org/868958 +Author: Graham Inggs <[email protected]> +Last-Update 2017-07-21 +--- bcftools.orig/vcfnorm.c ++++ bcftools/vcfnorm.c +@@ -94,7 +94,7 @@ + } + static inline int has_non_acgtn(char *seq, int nseq) + { +- char *end = nseq ? seq + nseq : seq + UINT32_MAX; // arbitrary large number ++ char *end = nseq ? seq + nseq : seq + (UINT32_MAX >> 2); // arbitrary large number + while ( *seq && seq<end ) + { + char c = toupper(*seq); diff --git a/debian/patches/series b/debian/patches/series index b4ead10..a6429f0 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -3,3 +3,4 @@ # destdir.patch tests-pluginpath.patch test-regidx-unsigned-char.patch +fix-test_vcf_query.patch -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bcftools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
