This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to tag debian/2.3.2+dfsg2-1 in repository seqan2.
commit e13c298f56daf684cc6559d7cf28cfc28f9a8893 Author: Michael R. Crusoe <[email protected]> Date: Thu Oct 12 03:11:10 2017 -0700 bye armhf; enforce & fix the tests Fix tests to work with -DSEQAN_DISABLE_VERSION_CHECK=YES --- debian/changelog | 6 ++++++ debian/clean | 1 + debian/control | 10 ++++++---- debian/copyright | 7 ++++++- debian/patches/fix-version_check-test | 13 +++++++++++++ debian/patches/series | 1 + debian/rules | 17 +++++++++-------- .../lintian-overrides} | 0 8 files changed, 42 insertions(+), 13 deletions(-) diff --git a/debian/changelog b/debian/changelog index e9641cd..e22bb06 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,9 @@ +seqan2 (2.3.2+dfsg2-1) UNRELEASED; urgency=medium + + * Still not enough memory for seqan-apps on amrhf, disabling + + -- Michael R. Crusoe <[email protected]> Thu, 12 Oct 2017 03:08:47 -0700 + seqan2 (2.3.2+dfsg-2) unstable; urgency=medium * Re-enable armhf, h/t Ubuntu diff --git a/debian/clean b/debian/clean new file mode 100644 index 0000000..b668703 --- /dev/null +++ b/debian/clean @@ -0,0 +1 @@ +fakehome/ diff --git a/debian/control b/debian/control index e62344e..2d53b0a 100644 --- a/debian/control +++ b/debian/control @@ -15,18 +15,20 @@ Build-Depends: debhelper (>= 10), help2man, python, python-jinja2, - python-sphinx, python-nose, - default-jdk, dh-linktree -Standards-Version: 4.1.0 +#default-jdk, +#python-sphinx, +#python-sphinx-rtd-theme, +Standards-Version: 4.1.1 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/seqan2.git Vcs-Git: https://anonscm.debian.org/git/debian-med/seqan2.git Homepage: http://www.seqan.de/ Package: seqan-apps -Architecture: any-amd64 arm64 armhf any-i386 mips64el powerpc ppc64el s390x alpha hppa m68k powerpcspe ppc64 sh4 sparc64 x32 +Architecture: any-amd64 arm64 any-i386 mips64el powerpc ppc64el s390x alpha hppa m68k powerpcspe ppc64 sh4 sparc64 x32 # Skipping armel as per Adrian Bunk <[email protected]> https://bugs.debian.org/877349 +# Skipping arhmf due to lack of memory Depends: ${shlibs:Depends}, ${misc:Depends} Description: C++ library for the analysis of biological sequences diff --git a/debian/copyright b/debian/copyright index ef27695..132d47e 100644 --- a/debian/copyright +++ b/debian/copyright @@ -3,7 +3,12 @@ Upstream-Name: SeqAn Upstream-Contact: Manuel Holtgrewe <[email protected]> Hannes Röst <[email protected]> Source: http://packages.seqan.de/ -Files-Excluded: util/py_lib +Files-Excluded: util/py_lib/seqan/dox + util/py_lib/seqan/dddoc + util/py_lib/clang + util/py_lib/termcolor.py + util/py_lib/threadpool + util/py_lib/pyratemp.py util/mingw .* */*.bak diff --git a/debian/patches/fix-version_check-test b/debian/patches/fix-version_check-test new file mode 100644 index 0000000..80821fe --- /dev/null +++ b/debian/patches/fix-version_check-test @@ -0,0 +1,13 @@ +Author: Michael R. Crusoe <[email protected]> +Description: Fixes test to work with -DSEQAN_DISABLE_VERSION_CHECK=YES +--- seqan2.orig/tests/arg_parse/test_arg_parse_version_check.h ++++ seqan2/tests/arg_parse/test_arg_parse_version_check.h +@@ -151,7 +151,7 @@ + SEQAN_ASSERT_EQ(stream_result[1], ""); + + // make sure that all files now exist +- SEQAN_ASSERT(fileExists(TestVersionCheck_::APP_TIMESTAMP_FILENAME.c_str())); ++ // SEQAN_ASSERT(fileExists(TestVersionCheck_::APP_TIMESTAMP_FILENAME.c_str())); + if (app_call_succeeded) + SEQAN_ASSERT(fileExists(TestVersionCheck_::APP_VERSION_FILENAME.c_str())); + } diff --git a/debian/patches/series b/debian/patches/series index 74f65e5..dcf0532 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1,3 +1,4 @@ spelling short-description skip-seqan-revision +fix-version_check-test diff --git a/debian/rules b/debian/rules index 6d1016b..cc3b7c8 100755 --- a/debian/rules +++ b/debian/rules @@ -45,7 +45,8 @@ pkgdev=libseqan2-dev dh $@ --parallel override_dh_auto_configure-arch: - dh_auto_configure -- -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS -DSEQAN_STATIC_APPS=False # skip the tests for now + # dh_auto_configure -- -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS -DSEQAN_STATIC_APPS=False # skip the tests for now + dh_auto_configure -- -DSEQAN_BUILD_SYSTEM=DEVELOP -DSEQAN_STATIC_APPS=False -DSEQAN_NO_DOX=1 -DSEQAN_DISABLE_VERSION_CHECK=YES override_dh_auto_configure-indep: ; @@ -109,10 +110,10 @@ override_dh_fixperms-indep: done find $(CURDIR)/debian/$(pkgdev)/usr/share/cmake -type f -exec chmod -x {} \; -override_dh_auto_test: -# Run test suite only on powerfull architectures (amd64) at build time -ifneq (,$(filter $(DEB_HOST_ARCH),amd64 kfreebsd-amd64)) - dh_auto_test || true -else - echo "Do not run test suite when building on architecture $(DEB_HOST_ARCH)" -endif +#override_dh_auto_test: +# # Run test suite only on powerfull architectures (amd64) at build time +# ifneq (,$(filter $(DEB_HOST_ARCH),amd64 kfreebsd-amd64)) +# dh_auto_test +# else +# echo "Do not run test suite when building on architecture $(DEB_HOST_ARCH)" +# endif diff --git a/debian/source.lintian-overrides b/debian/source/lintian-overrides similarity index 100% rename from debian/source.lintian-overrides rename to debian/source/lintian-overrides -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/seqan2.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
