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commit 39e45cd3db7983515645c04e3a95bed1d0e3e7ee Author: Alexandre Mestiashvili <[email protected]> Date: Fri Oct 13 14:53:08 2017 +0200 Drop single-cpu-for-test.patch, as we disabled random-test target completely --- debian/patches/series | 1 - debian/patches/single-cpu-for-test.patch | 51 -------------------------------- 2 files changed, 52 deletions(-) diff --git a/debian/patches/series b/debian/patches/series index 9eeec10..b49848a 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -3,4 +3,3 @@ hardening.patch reproducible.patch skip_test_requiring_non-free_libmath-random-perl.patch do-not-rebuild-during-test.patch -single-cpu-for-test.patch diff --git a/debian/patches/single-cpu-for-test.patch b/debian/patches/single-cpu-for-test.patch deleted file mode 100644 index d4c838a..0000000 --- a/debian/patches/single-cpu-for-test.patch +++ /dev/null @@ -1,51 +0,0 @@ -Description: only use single CPU for testing - This also frees us of the dependency to the non-packaged libsys-info-perl. -Author: Sascha Steinbiss <[email protected]> ---- bowtie2.orig/Makefile -+++ bowtie2/Makefile -@@ -493,7 +493,7 @@ - .PHONY: random-test perl-deps - random-test: all - eval `perl -I $(CURDIR)/.perllib.tmp/lib/perl5 -Mlocal::lib=$(CURDIR)/.perllib.tmp` ; \ -- sh ./scripts/sim/run.sh $(if $(NUM_CORES), $(NUM_CORES), 2) -+ sh ./scripts/sim/run.sh 1 #$(if $(NUM_CORES), $(NUM_CORES), 2) - - .PHONY: perl-deps - perl-deps: ---- bowtie2.orig/scripts/sim/run.sh -+++ bowtie2/scripts/sim/run.sh -@@ -19,7 +19,7 @@ - # along with Bowtie 2. If not, see <http://www.gnu.org/licenses/>. - # - --CPUS=$1 -+CPUS=1 - shift - #make -j$CPUS \ - # bowtie2-align-s \ ---- bowtie2.orig/scripts/sim/Sim.pm -+++ bowtie2/scripts/sim/Sim.pm -@@ -33,8 +33,8 @@ - use Math::Random; - use List::Util qw(max min); - use POSIX; --use Sys::Info; --use Sys::Info::Constants qw( :device_cpu ); -+#use Sys::Info; -+#use Sys::Info::Constants qw( :device_cpu ); - - ## - # Replacement for "die" that additionally writes error message to file so that -@@ -402,9 +402,9 @@ - if($r4 == 0) { - $args{"--offrate"} = int(rand(8))+1; - } -- my $info = Sys::Info->new; -- my $cpu = $info->device('CPU'); -- $args{"--threads"} = int(rand($cpu->count || 1)) + 1; -+# my $info = Sys::Info->new; -+# my $cpu = $info->device('CPU'); -+# $args{"--threads"} = int(rand($cpu->count || 1)) + 1; - $args{"--large-index"} = "" if $large_index; - return \%args; - } -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bowtie2.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
