This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository last-align.
commit c2d94c99456d4f9e97d0c90cae937b584964cd29 Merge: 72682ad 899a681 Author: Charles Plessy <[email protected]> Date: Sun Oct 15 22:05:41 2017 +0900 Merge tag 'upstream/885' Upstream version 885 # gpg: Signature faite le dim. 15 oct. 2017 22:05:38 JST # gpg: avec la clef RSA 73471499CC60ED9EEE805946C5BD6C8F2295D502 # gpg: Bonne signature de « Charles Plessy <[email protected]> » [totale] # Empreinte de clef principale : 7347 1499 CC60 ED9E EE80 5946 C5BD 6C8F 2295 D502 ChangeLog.txt | 87 +++++++++++++++++++++++++++++++++++++++++++- doc/last-dotplot.html | 17 +++++++-- doc/last-dotplot.txt | 15 ++++++-- doc/last-parallel.html | 4 +-- doc/last-parallel.txt | 4 +-- doc/last-train.html | 4 +++ doc/last-train.txt | 2 ++ doc/last-tuning.html | 7 ++-- doc/last-tuning.txt | 8 ++--- doc/last.html | 4 +-- doc/last.txt | 4 +-- doc/lastal.html | 13 ++++--- doc/lastal.txt | 9 +++-- doc/lastdb.html | 5 +-- doc/lastdb.txt | 5 +-- doc/maf-convert.html | 12 +++---- doc/maf-convert.txt | 18 +++++----- scripts/fastq-interleave | 10 ++---- scripts/last-dotplot | 75 +++++++++++++++++++++++--------------- scripts/last-postmask | 23 +++++++----- scripts/last-train | 79 ++++++++++++++++++++++++++-------------- scripts/maf-convert | 93 +++++++++++++++++++++++++++++++++++------------- src/Alphabet.cc | 8 ----- src/Alphabet.hh | 3 -- src/LastEvaluer.cc | 2 +- src/LastalArguments.cc | 33 ++++++++++++----- src/MultiSequence.cc | 7 ---- src/MultiSequence.hh | 66 +++++++++++++++++++++++++++++++--- src/MultiSequenceQual.cc | 22 ++++-------- src/io.cc | 11 ++---- src/io.hh | 7 ++-- src/last-pair-probs.cc | 4 +-- src/lastal.cc | 32 ++--------------- src/lastdb.cc | 43 ++++++++++------------ src/makefile | 32 ++++++++--------- src/mcf_zstream.hh | 82 ++++++++++++++++++++++++++++++++++++++++++ src/version.hh | 2 +- 37 files changed, 569 insertions(+), 283 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/last-align.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
