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commit 08ecce9cfdc96bdb1ce1211bb446e990e291bff4 Merge: 139eabe e99d951 Author: Alexandre Mestiashvili <a...@biotec.tu-dresden.de> Date: Fri Nov 17 13:31:58 2017 +0100 Update upstream source from tag 'upstream/1.6.0+dfsg' Update to upstream version '1.6.0+dfsg' with Debian dir 59767e5208ed36e03f2c39df9ee4fa3bd19f7a1c doc/SubreadUsersGuide.tex | 53 +- src/Makefile.FreeBSD | 13 +- src/Makefile.Linux | 11 +- src/Makefile.MacOS | 10 +- src/core-interface-aligner.c | 5 +- src/core-interface-subjunc.c | 3 +- src/core-junction.c | 66 +- src/core.c | 57 +- src/gene-algorithms.c | 29 +- src/gene-value-index.c | 48 +- src/input-files.c | 131 +- src/longread-mapping/LRMbase-index.c | 285 ++++ src/longread-mapping/LRMbase-index.h | 38 + src/longread-mapping/LRMchro-event.c | 1241 +++++++++++++++++ src/longread-mapping/LRMchro-event.h | 40 + src/longread-mapping/LRMconfig.h | 389 ++++++ src/longread-mapping/LRMfile-io.c | 673 +++++++++ src/longread-mapping/LRMfile-io.h | 55 + src/longread-mapping/LRMhelper.c | 77 + src/longread-mapping/LRMhelper.h | 28 + src/longread-mapping/LRMsorted-hashtable.c | 534 +++++++ src/longread-mapping/LRMsorted-hashtable.h | 44 + src/longread-mapping/Makefile | 23 + src/longread-mapping/hashtable.c | 797 +++++++++++ src/longread-mapping/hashtable.h | 471 +++++++ src/longread-mapping/longread-mapping-one.c | 1231 ++++++++++++++++ src/longread-mapping/longread-mapping.c | 2012 +++++++++++++++++++++++++++ src/longread-mapping/seek-zlib.c | 363 +++++ src/longread-mapping/seek-zlib.h | 86 ++ src/makefile.version | 2 +- src/propmapped.c | 13 +- src/readSummary.c | 257 +++- src/subread.h | 23 +- 33 files changed, 8933 insertions(+), 175 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/subread.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit