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bob.dybian-guest pushed a commit to branch master
in repository plink1.9.
commit 0803ff5b7e4c6ea980591cddcaa96d21694c0c64
Author: Dylan Aïssi <bob.dyb...@gmail.com>
Date: Thu Nov 30 22:56:25 2017 +0100
Update changelogs
---
debian/changelog | 6 ++++++
debian/upstream.docs/upstream.changelog | 6 +++++-
2 files changed, 11 insertions(+), 1 deletion(-)
diff --git a/debian/changelog b/debian/changelog
index e723d6c..0954e93 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+plink1.9 (1.90~b5-171114-1) UNRELEASED; urgency=medium
+
+ * New upstream release.
+
+ -- Dylan Aïssi <bob.dyb...@gmail.com> Thu, 30 Nov 2017 22:53:23 +0100
+
plink1.9 (1.90~b4.9-171013-1) unstable; urgency=medium
* New upstream release.
diff --git a/debian/upstream.docs/upstream.changelog
b/debian/upstream.docs/upstream.changelog
index 3504eb3..c886d01 100644
--- a/debian/upstream.docs/upstream.changelog
+++ b/debian/upstream.docs/upstream.changelog
@@ -1,6 +1,10 @@
# Copy/Paste from https://www.cog-genomics.org/plink/1.9/
-15 Oct 2017: A2 allele is now consistently reference on chr3 in our 1000
Genomes phase 1 downloads. As a general rule, you shouldn't expect to keep
REF/ALT alleles straight with PLINK 1.x, but we tried to make A2 consistently
reference in these files and still didn't quite succeed; sorry about that.
+14 Nov 2017 (beta 5): --file + --merge{-list} bugfix. This bug was much more
likely to trigger if the first .map file was unsorted, but if you have the
chance we recommend redoing any --file + --merge and --file + --merge-list
multi-.ped merges performed with earlier plink 1.9 builds. (.bed merging was
unaffected, and --merge-list without --file was practically never affected.)
+
+3 Nov: --meta-analysis-snp-field and --meta-analysis-ess-field bugfixes.
+
+15 Oct: A2 allele is now consistently reference on chr3 in our 1000 Genomes
phase 1 downloads. As a general rule, you shouldn't expect to keep REF/ALT
alleles straight with PLINK 1.x, but we tried to make A2 consistently reference
in these files and still didn't quite succeed; sorry about that.
(Why was this discovered now, more than 2.5 years after the fact? Because
PLINK 2.0 now has a --ref-from-fa flag which can easily check for this type of
error.)
13 Oct: "--freq counts" no longer gives reversed results when alleles have
been flipped from the initial .bim/.bed order. Fixed --logistic bug that could
cause spurious NA results.
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