This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to tag debian/2.3.2.001platform-issues10-6f85721+dfsg-1 in repository seqan2.
commit 9b11d0813b84789193ecbef3f30dfb6250e3f195 Merge: b19650a 4955144 Author: Michael R. Crusoe <[email protected]> Date: Wed Jan 3 09:13:44 2018 -0800 Update upstream source from tag 'upstream/2.3.2.001platform-issues10-6f85721+dfsg' Update to upstream version '2.3.2.001platform-issues10-6f85721+dfsg' with Debian dir 44be9185e1cf97bc5cc6e5e69231ab333c79c707 apps/alf/CMakeLists.txt | 2 +- apps/alf/alf.cpp | 2 +- apps/bs_tools/CMakeLists.txt | 2 +- apps/dfi/CMakeLists.txt | 2 +- apps/fiona/CMakeLists.txt | 2 +- apps/fiona/compute_gain.cpp | 6 +- apps/fx_tools/CMakeLists.txt | 2 +- apps/gustaf/CMakeLists.txt | 2 +- apps/insegt/CMakeLists.txt | 2 +- apps/mason2/CMakeLists.txt | 2 +- apps/mason2/mason_genome.cpp | 2 +- apps/mason2/mason_variator.cpp | 10 +- apps/micro_razers/CMakeLists.txt | 2 +- apps/ngs_roi/CMakeLists.txt | 4 +- apps/pair_align/CMakeLists.txt | 2 +- apps/param_chooser/CMakeLists.txt | 2 +- apps/rabema/CMakeLists.txt | 4 +- apps/rabema/rabema_build_gold_standard.cpp | 2 +- apps/rabema/rabema_evaluate.cpp | 4 +- apps/razers/CMakeLists.txt | 2 +- apps/razers3/CMakeLists.txt | 2 +- apps/rep_sep/CMakeLists.txt | 2 +- apps/sak/CMakeLists.txt | 4 +- apps/sam2matrix/CMakeLists.txt | 2 +- apps/samcat/CMakeLists.txt | 2 +- apps/searchjoin/CMakeLists.txt | 2 +- apps/searchjoin/db.h | 8 +- apps/seqan_tcoffee/CMakeLists.txt | 2 +- apps/seqcons2/CMakeLists.txt | 2 +- apps/sgip/CMakeLists.txt | 2 +- apps/snp_store/CMakeLists.txt | 2 +- apps/splazers/CMakeLists.txt | 2 +- apps/stellar/CMakeLists.txt | 2 +- apps/stellar/stellar.cpp | 2 +- apps/tree_recon/CMakeLists.txt | 2 +- apps/yara/CMakeLists.txt | 2 +- dox/CMakeLists.txt | 2 +- .../align/local_alignment_waterman_eggert_impl.h | 39 ++--- include/seqan/arg_parse/arg_parse_argument.h | 36 +---- include/seqan/arg_parse/tool_doc.h | 7 - include/seqan/bam_io/bam_alignment_record_util.h | 2 +- include/seqan/index/index_base.h | 2 +- include/seqan/index/index_fm_compressed_sa.h | 6 +- include/seqan/index/index_fm_lf_table.h | 2 +- .../seqan/index/index_fm_rank_dictionary_base.h | 2 +- .../seqan/index/index_fm_rank_dictionary_levels.h | 6 +- .../seqan/index/index_fm_rank_dictionary_naive.h | 2 +- include/seqan/index/index_qgram.h | 2 +- include/seqan/modifier/modifier_padding.h | 51 +----- include/seqan/platform.h | 4 +- include/seqan/seeds/seeds_global_chaining.h | 162 ++++++++----------- include/seqan/stream/iter_stream.h | 178 +++++++++------------ manual/source/Infrastructure/Use/Install.rst | 42 ++--- tests/align/test_alignment_algorithms_local.h | 47 ------ .../align/test_alignment_algorithms_local_banded.h | 32 ---- tests/arg_parse/test_arg_parse.cpp | 1 - tests/arg_parse/test_arg_parse_argument.h | 28 ---- tests/modifier/test_modifier.cpp | 3 +- tests/modifier/test_modifier_string_padding.h | 24 --- tests/seeds/test_seeds_global_chaining.cpp | 26 --- util/cmake/SeqAnBuildSystem.cmake | 25 +-- util/pkgconfig/seqan.pc.in | 4 +- util/skel/app_template/CMakeLists.txt | 2 +- 63 files changed, 257 insertions(+), 578 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/seqan2.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
