This is an automated email from the git hooks/post-receive script. bob.dybian-guest pushed a commit to branch master in repository beagle.
commit baf37dc83b01750f4d0e1ee9951db521b6f181e6 Author: Dylan Aïssi <[email protected]> Date: Tue Jan 30 23:31:07 2018 +0100 New upstream version 4.1~180127+dfsg --- main/LowMemHapAlleleProbs.java | 6 +++++- main/Main.java | 6 +++--- vcf/R2Estimator.java | 2 +- 3 files changed, 9 insertions(+), 5 deletions(-) diff --git a/main/LowMemHapAlleleProbs.java b/main/LowMemHapAlleleProbs.java index 2001db7..f55bc20 100644 --- a/main/LowMemHapAlleleProbs.java +++ b/main/LowMemHapAlleleProbs.java @@ -98,7 +98,11 @@ public class LowMemHapAlleleProbs implements HapAlleleProbs { } private static float convertToFloat(byte b) { - return (b + 128.5f)*INCREMENT; + switch(b) { + case Byte.MIN_VALUE: return 0f; + case Byte.MAX_VALUE: return 1f; + default: return (b + 128.5f)*INCREMENT; + } } @Override diff --git a/main/Main.java b/main/Main.java index 397b0c6..6a73a14 100644 --- a/main/Main.java +++ b/main/Main.java @@ -65,8 +65,8 @@ public class Main { /** * The program name and version. */ - public static final String program = "beagle.08Jun17.d8b.jar (version 4.1)"; - public static final String command = "java -jar beagle.08Jun17.d8b.jar"; + public static final String program = "beagle.27Jan18.7e1.jar (version 4.1)"; + public static final String command = "java -jar beagle.27Jan18.7e1.jar"; /** * The copyright string. @@ -78,7 +78,7 @@ public class Main { */ public static final String shortHelp = Main.program + Const.nl + Main.copyright - + Const.nl + "Enter \"java -jar beagle.08Jun17.d8b.jar\" for a " + + Const.nl + "Enter \"java -jar beagle.27Jan18.7e1.jar\" for a " + "summary of command line " + "arguments."; private final Par par; diff --git a/vcf/R2Estimator.java b/vcf/R2Estimator.java index e52459c..10ab8ce 100644 --- a/vcf/R2Estimator.java +++ b/vcf/R2Estimator.java @@ -36,7 +36,7 @@ public final class R2Estimator { private double sumSquareCall = 0; private double sumExpected = 0; private double sumExpectedSquare = 0; - private double sumSquareExpected= 0; + private double sumSquareExpected = 0; private double sumCallExpected = 0; /** -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/beagle.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
