This is an automated email from the git hooks/post-receive script. ginggs pushed a commit to branch master in repository bitseq.
commit ce48c26201f9548fb7bb42da0eab547e53db282b Author: Graham Inggs <gin...@debian.org> Date: Fri Feb 2 12:11:51 2018 +0200 Link -lbam before -lz to fix build with -Wl,--as-needed --- debian/changelog | 6 ++++++ debian/patches/link_against_system_samtools.patch | 2 +- 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/debian/changelog b/debian/changelog index f8ab7f8..fc88e74 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,9 @@ +bitseq (0.7.5+dfsg-4) UNRELEASED; urgency=medium + + * Link -lbam before -lz to fix build with -Wl,--as-needed + + -- Graham Inggs <gin...@debian.org> Fri, 02 Feb 2018 09:30:20 +0000 + bitseq (0.7.5+dfsg-3) unstable; urgency=medium * Build-Depends: python-numpy (Thanks for the patch to Chris Lamb diff --git a/debian/patches/link_against_system_samtools.patch b/debian/patches/link_against_system_samtools.patch index de5cce8..4fa7739 100644 --- a/debian/patches/link_against_system_samtools.patch +++ b/debian/patches/link_against_system_samtools.patch @@ -11,7 +11,7 @@ Description: link against Debian packaged samtools -parseAlignment: parseAlignment.cpp $(COMMON_DEPS) ReadDistribution.o samtools/sam.o TranscriptExpression.o TranscriptInfo.o TranscriptSequence.o - $(CXX) $(CXXFLAGS) $(OPENMP) $(LDFLAGS) -pthread parseAlignment.cpp $(COMMON_DEPS) ReadDistribution.o samtools/*.o TranscriptExpression.o TranscriptInfo.o TranscriptSequence.o -lz -o parseAlignment +parseAlignment: parseAlignment.cpp $(COMMON_DEPS) ReadDistribution.o TranscriptExpression.o TranscriptInfo.o TranscriptSequence.o -+ $(CXX) $(CXXFLAGS) $(OPENMP) $(LDFLAGS) -pthread parseAlignment.cpp $(COMMON_DEPS) ReadDistribution.o TranscriptExpression.o TranscriptInfo.o TranscriptSequence.o -lz -lbam -o parseAlignment ++ $(CXX) $(CXXFLAGS) $(OPENMP) $(LDFLAGS) -pthread parseAlignment.cpp $(COMMON_DEPS) ReadDistribution.o TranscriptExpression.o TranscriptInfo.o TranscriptSequence.o -lbam -lz -o parseAlignment transposeLargeFile: transposeLargeFile.cpp $(COMMON_DEPS) transposeFiles.o $(CXX) $(CXXFLAGS) $(LDFLAGS) transposeLargeFile.cpp $(COMMON_DEPS) transposeFiles.o -o transposeLargeFile -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bitseq.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit