This is an automated email from the git hooks/post-receive script. afif pushed a commit to annotated tag debian/0.9.9.23+dfsg-1 in repository sprai.
commit 0d163af0aed80a5d4a866dab98e1d2a873a99dbd Author: Afif Elghraoui <[email protected]> Date: Sun Feb 4 05:05:04 2018 -0500 New upstream version 0.9.9.23+dfsg --- doc/_build/html/_sources/Download.txt | 4 +++- dumbbell_filter.pl | 11 +++++++++++ ec.spec | 2 +- makefile | 2 +- wscript | 2 +- 5 files changed, 17 insertions(+), 4 deletions(-) diff --git a/doc/_build/html/_sources/Download.txt b/doc/_build/html/_sources/Download.txt index c65687c..4befd04 100644 --- a/doc/_build/html/_sources/Download.txt +++ b/doc/_build/html/_sources/Download.txt @@ -1,11 +1,13 @@ =========================== Download The Latest Version =========================== -http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.21.tar.gz +http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.22.tar.gz ============== Older releases ============== +http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.21.tar.gz + http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.20.tar.gz http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.19.tar.gz diff --git a/dumbbell_filter.pl b/dumbbell_filter.pl index 6187f93..f943e3b 100755 --- a/dumbbell_filter.pl +++ b/dumbbell_filter.pl @@ -149,6 +149,16 @@ sub flush($$$$){ my $longest = length($reads[0]); my $i_adequate=0; + # use longest subread + if(@reads > 1){ + for(my $i=1; $i<@reads; ++$i){ + if(length($reads[$i]) > $longest){ + $longest = length($reads[$i]); + $i_adequate = $i; + } + } + } +=pod # discard last one (because it may have low quality) # if # of subreads > 2, then use 1st or 2nd read. # else use 1st read @@ -158,6 +168,7 @@ sub flush($$$$){ $i_adequate = 1; } } +=cut printf("\@%s\n",$names[$i_adequate]); printf("%s\n",$reads[$i_adequate]); printf("%s\n",$opts[$i_adequate]); diff --git a/ec.spec b/ec.spec index 1c16fd3..452bd6b 100644 --- a/ec.spec +++ b/ec.spec @@ -53,7 +53,7 @@ max_target_seqs 100 trim 42 # if not 0, use only one subread per one molecule -use_one_subread 0 +use_one_subread 1 # direct_vote & copy_blastdb are used by ezez4makefile_v4.pl direct_vote 0 diff --git a/makefile b/makefile index 78ff75f..ccc8a99 100644 --- a/makefile +++ b/makefile @@ -1,5 +1,5 @@ APPNAME = 'sprai' -VERSION = '0.9.9.22' +VERSION = '0.9.9.23' PREFIX=$(PWD) COMPILED= \ diff --git a/wscript b/wscript index e0b432d..f0292c8 100644 --- a/wscript +++ b/wscript @@ -1,5 +1,5 @@ APPNAME = 'sprai' -VERSION = '0.9.9.22' +VERSION = '0.9.9.23' srcdir = '.' blddir = 'build' -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/sprai.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
