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commit f058b0c674135761953ba06f30b44e7191c798ff Author: Julien Y. Dutheil <[email protected]> Date: Tue Feb 6 13:44:18 2018 +0100 New upstream version 2.3.2 --- ChangeLog | 3 +++ src/Bpp/PopGen/SequenceStatistics.cpp | 4 ++-- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/ChangeLog b/ChangeLog index dbf640e..b910c54 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,3 +1,6 @@ +24/11/17 Julien Dutheil +* Fixed error in tajima83. + 10/05/17 -*- Version 2.3.0 -*- 17/12/16 Julien Dutheil diff --git a/src/Bpp/PopGen/SequenceStatistics.cpp b/src/Bpp/PopGen/SequenceStatistics.cpp index 5aa3b19..20271e9 100644 --- a/src/Bpp/PopGen/SequenceStatistics.cpp +++ b/src/Bpp/PopGen/SequenceStatistics.cpp @@ -323,9 +323,9 @@ double SequenceStatistics::tajima83(const PolymorphismSequenceContainer& psc, bo while (si->hasMoreSites()) { site = si->nextSite(); + l++; if (!SiteTools::isConstant(*site, ignoreUnknown)) { - l++; double value = 0.; map<int, size_t> count; SymbolListTools::getCounts(*site, count); @@ -731,7 +731,7 @@ unsigned int SequenceStatistics::numberOfSynonymousSubstitutions(const Polymorph while (si->hasMoreSites()) { site = si->nextSite(); - st += CodonSiteTools::numberOfSubsitutions(*site, gc, freqmin); + st += CodonSiteTools::numberOfSubstitutions(*site, gc, freqmin); sns += CodonSiteTools::numberOfNonSynonymousSubstitutions(*site, gc, freqmin); } return static_cast<unsigned int>(st - sns); -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/libbpp-popgen.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
