Olivier Sallou pushed to branch master at Debian Med / ncbi-blastplus
Commits:
e4bfa6dd by Olivier Sallou at 2018-02-11T17:54:15+00:00
new upstream release 2.7.1
- - - - -
926ddb0d by Olivier Sallou at 2018-02-11T18:30:46+00:00
Merge branch 'master' of salsa.debian.org:med-team/ncbi-blastplus
- - - - -
4 changed files:
- debian/changelog
- + debian/patches/fix_unit_tests
- debian/patches/series
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,15 +1,10 @@
-ncbi-blast+ (2.7.1-1) UNRELEASED; urgency=medium
+ncbi-blast+ (2.7.1-1) unstable; urgency=medium
* New upstream release
d/patches: update patch for new release
d/control:
go to standards 4.1.3
add mbedtls dependency
-
-
- [TODO]
- new embedded library mbedtls in c++/src/connect/
- some unit tests are failing due to symbols not found
-- Olivier Sallou <[email protected]> Sat, 10 Feb 2018 17:35:31 +0000
=====================================
debian/patches/fix_unit_tests
=====================================
--- /dev/null
+++ b/debian/patches/fix_unit_tests
@@ -0,0 +1,14 @@
+Subject: add missing lib for tests
+Description: unit_test need blast lib to compile
+Forwarded: Not-Needed
+Author: Olivier Sallou <[email protected]>
+Last-Updated: 2018-02-11
+--- a/c++/src/algo/blast/Makefile.blast_macros.mk
++++ b/c++/src/algo/blast/Makefile.blast_macros.mk
+@@ -21,5 +21,5 @@
+ BLAST_LDEP = xalgoblastdbindex composition_adjustment \
+ xalgodustmask xalgowinmask seqmasks_io seqdb blast_services
xalnmgr \
+ xobjutil $(OBJREAD_LIBS) xnetblastcli xnetblast blastdb
scoremat tables
+-BLAST_LIBS = proteinkmer xblast $(BLAST_LDEP)
++BLAST_LIBS = proteinkmer xblast blast $(BLAST_LDEP)
+ # BLAST additionally needs xconnect $(SOBJMGR_LIBS) or $(OBJMGR_LIBS)
=====================================
debian/patches/series
=====================================
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -11,3 +11,4 @@ fix_configure
support_x32
suppress_gnutls_version_check
optionally_keep_sequence
+fix_unit_tests
=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -125,5 +125,5 @@ override_dh_gencontrol-indep:
dh_gencontrol -Nblast2
%:
- dh $@ -Dc++ --with autotools_dev
- #dh $@ -Dc++
+ #dh $@ -Dc++ --with autotools_dev
+ dh $@ -Dc++
View it on GitLab:
https://salsa.debian.org/med-team/ncbi-blastplus/compare/018c8136ce2e54dd484dfe072b00aa8d1bbee0b5...926ddb0dcdd55dc46c76f94d7fe9c5a71e684946
---
View it on GitLab:
https://salsa.debian.org/med-team/ncbi-blastplus/compare/018c8136ce2e54dd484dfe072b00aa8d1bbee0b5...926ddb0dcdd55dc46c76f94d7fe9c5a71e684946
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